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SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis

Science (American Association for the Advancement of Science), 2018-05, Vol.360 (6390), p.800-805

2018

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Sequencing of the Arabidopsis NOR2 reveals its distinct organization and tissue-specific rRNA ribosomal variants

Nature communications, 2021-01, Vol.12 (1), p.387-387, Article 387

2021

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TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

BMC evolutionary biology, 2004-06, Vol.4, p.18

2004

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A compendium of genome-wide sequence reads from NBS (nucleotide binding site) domains of resistance genes in the common potato

Scientific reports, 2020-07, Vol.10 (1), p.11392-11392, Article 11392

2020

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The genomic basis of circadian and circalunar timing adaptations in a midge

Nature (London), 2016-12, Vol.540 (7631), p.69-73

2016

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Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

Systematic biology, 2016-11, Vol.65 (6), p.997-1008

2016

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W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

Nucleic acids research, 2016-07, Vol.44 (W1), p.W232-W235

2016

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Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects

Molecular biology and evolution, 2014-01, Vol.31 (1), p.239-249

2014

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UFBoot2: Improving the Ultrafast Bootstrap Approximation

Molecular biology and evolution, 2018-02, Vol.35 (2), p.518-522

2018

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ADAR2 induces reproducible changes in sequence and abundance of mature microRNAs in the mouse brain

Nucleic acids research, 2014-10, Vol.42 (19), p.12155-12168

2014

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Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase

eLife, 2019-02, Vol.8

2019

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Separable Roles for a Caenorhabditis elegans RMI1 Homolog in Promoting and Antagonizing Meiotic Crossovers Ensure Faithful Chromosome Inheritance

PLoS biology, 2016-03, Vol.14 (3), p.e1002412-e1002412

2016

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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Molecular biology and evolution, 2020-05, Vol.37 (5), p.1530-1534

2020

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Likelihood-Mapping: A Simple Method to Visualize Phylogenetic Content of a Sequence Alignment

Proceedings of the National Academy of Sciences - PNAS, 1997-06, Vol.94 (13), p.6815-6819

1997

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IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

Molecular biology and evolution, 2015-01, Vol.32 (1), p.268-274

2015

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NextGenMap: fast and accurate read mapping in highly polymorphic genomes

Bioinformatics, 2013-11, Vol.29 (21), p.2790-2791

2013

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Distribution and Phylogeny of Light-Oxygen-Voltage-Blue-Light-Signaling Proteins in the Three Kingdoms of Life

Journal of Bacteriology, 2009-12, Vol.191 (23), p.7234-7242

2009

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Accurate detection of complex structural variations using single-molecule sequencing

Nature methods, 2018-06, Vol.15 (6), p.461-468

2018

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Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes

Nature communications, 2018-04, Vol.9 (1), p.1517-17, Article 1517

2018

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GHOST: Recovering Historical Signal from Heterotachously Evolved Sequence Alignments

Systematic biology, 2020-03, Vol.69 (2), p.249

2020

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Updating benchtop sequencing performance comparison

Nature biotechnology, 2013-04, Vol.31 (4), p.294-296

2013

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MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation

BMC evolutionary biology, 2018-02, Vol.18 (1), p.11, Article 11

2018

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A-type lamins bind both hetero- and euchromatin, the latter being regulated by lamina-associated polypeptide 2 alpha

Genome research, 2016-04, Vol.26 (4), p.462-473

2016

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HaMStR: profile hidden markov model based search for orthologs in ESTs

BMC evolutionary biology, 2009-07, Vol.9 (1), p.157

2009

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Gruffi: an algorithm for computational removal of stressed cells from brain organoid transcriptomic datasets

The EMBO journal, 2022-09, Vol.41 (17), p.e111118-n/a

2022

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SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis

Sequencing of the Arabidopsis NOR2 reveals its distinct organization and tissue-specific rRNA ribosomal variants

TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

A compendium of genome-wide sequence reads from NBS (nucleotide binding site) domains of resistance genes in the common potato

The genomic basis of circadian and circalunar timing adaptations in a midge

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects

UFBoot2: Improving the Ultrafast Bootstrap Approximation

ADAR2 induces reproducible changes in sequence and abundance of mature microRNAs in the mouse brain

Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase

Separable Roles for a Caenorhabditis elegans RMI1 Homolog in Promoting and Antagonizing Meiotic Crossovers Ensure Faithful Chromosome Inheritance

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Likelihood-Mapping: A Simple Method to Visualize Phylogenetic Content of a Sequence Alignment

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

NextGenMap: fast and accurate read mapping in highly polymorphic genomes

Distribution and Phylogeny of Light-Oxygen-Voltage-Blue-Light-Signaling Proteins in the Three Kingdoms of Life

Accurate detection of complex structural variations using single-molecule sequencing

Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes

GHOST: Recovering Historical Signal from Heterotachously Evolved Sequence Alignments

Updating benchtop sequencing performance comparison

MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation

A-type lamins bind both hetero- and euchromatin, the latter being regulated by lamina-associated polypeptide 2 alpha

HaMStR: profile hidden markov model based search for orthologs in ESTs

Gruffi: an algorithm for computational removal of stressed cells from brain organoid transcriptomic datasets

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