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Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples

Journal of clinical microbiology, 2019-12, Vol.58 (1)

2019

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Direct Whole-Genome Sequencing of Sputum Accurately Identifies Drug-Resistant Mycobacterium tuberculosis Faster than MGIT Culture Sequencing

Journal of clinical microbiology, 2018-08, Vol.56 (8)

2018

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Plasmid-Encoded Transferable mecB-Mediated Methicillin Resistance in Staphylococcus aureus

Emerging infectious diseases, 2018-02, Vol.24 (2), p.242-248

2018

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Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Whole-Genome Sequence-Based Typing of Listeria monocytogenes

Journal of clinical microbiology, 2015-09, Vol.53 (9), p.2869-2876

2015

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Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates

Journal of clinical microbiology, 2017-12, Vol.55 (12), p.3530-3543

2017

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Real-Time Genome Sequencing of Resistant Bacteria Provides Precision Infection Control in an Institutional Setting

Journal of clinical microbiology, 2016-12, Vol.54 (12), p.2874-2881

2016

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A Pandemic in Times of Global Tourism: Superspreading and Exportation of COVID-19 Cases from a Ski Area in Austria

Journal of clinical microbiology, 2020-05, Vol.58 (6)

2020

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Antibiotic-Mediated Modulations of Outer Membrane Vesicles in Enterohemorrhagic Escherichia coli O104:H4 and O157:H7

Antimicrobial agents and chemotherapy, 2017-09, Vol.61 (9)

2017

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Bacterial whole-genome sequencing revisited: portable, scalable, and standardized analysis for typing and detection of virulence and antibiotic resistance genes

Journal of clinical microbiology, 2014-07, Vol.52 (7), p.2365-2370

2014

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Species Identification and Antibiotic Resistance Prediction by Analysis of Whole-Genome Sequence Data by Use of ARESdb: an Analysis of Isolates from the Unyvero Lower Respiratory Tract Infection Trial

Journal of clinical microbiology, 2020-06, Vol.58 (7)

2020

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Persistent Transmission of Shigellosis in England Is Associated with a Recently Emerged Multidrug-Resistant Strain of Shigella sonnei

Journal of clinical microbiology, 2020-03, Vol.58 (4)

2020

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Occurrence of ESBL-Producing Escherichia coli in Livestock and Farm Workers in Mecklenburg-Western Pomerania, Germany

PloS one, 2015-11, Vol.10 (11), p.e0143326-e0143326

2015

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Assessment of SARS-CoV-2 Genome Sequencing: Quality Criteria and Low-Frequency Variants

Journal of clinical microbiology, 2021-09, Vol.59 (10), p.e0094421-e0094421

2021

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Characterisation of the Escherichia coli strain associated with an outbreak of haemolytic uraemic syndrome in Germany, 2011: a microbiological study

The Lancet infectious diseases, 2011-09, Vol.11 (9), p.671-676

2011

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Genomic Investigation Reveals Contaminated Detergent as the Source of an Extended-Spectrum-β-Lactamase-Producing Klebsiella michiganensis Outbreak in a Neonatal Unit

Journal of clinical microbiology, 2020-04, Vol.58 (5)

2020

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Real-Time Nanopore Q20+ Sequencing Enables Extremely Fast and Accurate Core Genome MLST Typing and Democratizes Access to High-Resolution Bacterial Pathogen Surveillance

Journal of clinical microbiology, 2023-04, Vol.61 (4), p.e0163122-e0163122

2023

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Livestock-associated methicillin-resistant Staphylococcus aureus (MRSA) as causes of human infection and colonization in Germany

PloS one, 2013-02, Vol.8 (2), p.e55040-e55040

2013

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Core Genome Multilocus Sequence Typing Scheme for High- Resolution Typing of Enterococcus faecium

Journal of clinical microbiology, 2015-12, Vol.53 (12), p.3788-3797

2015

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Host cell interactions of outer membrane vesicle-associated virulence factors of enterohemorrhagic Escherichia coli O157: Intracellular delivery, trafficking and mechanisms of cell injury

PLoS pathogens, 2017-02, Vol.13 (2), p.e1006159-e1006159

2017

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Validation of the VirCapSeq-VERT system for differential diagnosis, detection, and surveillance of viral infections

Journal of clinical microbiology, 2024-01, Vol.62 (1), p.e0061223

2024

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Genomic Analysis of a Hospital-Associated Outbreak of Mycobacterium abscessus: Implications on Transmission

Journal of clinical microbiology, 2022-01, Vol.60 (1), p.e0154721

2022

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Multicenter Evaluation of a Sequence-Based Protocol for Subtyping Shiga Toxins and Standardizing Stx Nomenclature

Journal of Clinical Microbiology, 2012-09, Vol.50 (9), p.2951-2963

2012

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hicap: In Silico Serotyping of the Haemophilus influenzae Capsule Locus

Journal of clinical microbiology, 2019-06, Vol.57 (6)

2019

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Helicobacter pylori Infections in the Bronx, New York: Surveying Antibiotic Susceptibility and Strain Lineage by Whole-Genome Sequencing

Journal of clinical microbiology, 2020-02, Vol.58 (3)

2020

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Machine-Learning Model for Prediction of Cefepime Susceptibility in Escherichia coli from Whole-Genome Sequencing Data

Journal of clinical microbiology, 2023-03, Vol.61 (3), p.e0143122-e0143122

2023

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Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples

Direct Whole-Genome Sequencing of Sputum Accurately Identifies Drug-Resistant Mycobacterium tuberculosis Faster than MGIT Culture Sequencing

Plasmid-Encoded Transferable mecB-Mediated Methicillin Resistance in Staphylococcus aureus

Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Whole-Genome Sequence-Based Typing of Listeria monocytogenes

Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates

Real-Time Genome Sequencing of Resistant Bacteria Provides Precision Infection Control in an Institutional Setting

A Pandemic in Times of Global Tourism: Superspreading and Exportation of COVID-19 Cases from a Ski Area in Austria

Antibiotic-Mediated Modulations of Outer Membrane Vesicles in Enterohemorrhagic Escherichia coli O104:H4 and O157:H7

Bacterial whole-genome sequencing revisited: portable, scalable, and standardized analysis for typing and detection of virulence and antibiotic resistance genes

Species Identification and Antibiotic Resistance Prediction by Analysis of Whole-Genome Sequence Data by Use of ARESdb: an Analysis of Isolates from the Unyvero Lower Respiratory Tract Infection Trial

Persistent Transmission of Shigellosis in England Is Associated with a Recently Emerged Multidrug-Resistant Strain of Shigella sonnei

Occurrence of ESBL-Producing Escherichia coli in Livestock and Farm Workers in Mecklenburg-Western Pomerania, Germany

Assessment of SARS-CoV-2 Genome Sequencing: Quality Criteria and Low-Frequency Variants

Characterisation of the Escherichia coli strain associated with an outbreak of haemolytic uraemic syndrome in Germany, 2011: a microbiological study

Genomic Investigation Reveals Contaminated Detergent as the Source of an Extended-Spectrum-β-Lactamase-Producing Klebsiella michiganensis Outbreak in a Neonatal Unit

Real-Time Nanopore Q20+ Sequencing Enables Extremely Fast and Accurate Core Genome MLST Typing and Democratizes Access to High-Resolution Bacterial Pathogen Surveillance

Livestock-associated methicillin-resistant Staphylococcus aureus (MRSA) as causes of human infection and colonization in Germany

Core Genome Multilocus Sequence Typing Scheme for High- Resolution Typing of Enterococcus faecium

Host cell interactions of outer membrane vesicle-associated virulence factors of enterohemorrhagic Escherichia coli O157: Intracellular delivery, trafficking and mechanisms of cell injury

Validation of the VirCapSeq-VERT system for differential diagnosis, detection, and surveillance of viral infections

Genomic Analysis of a Hospital-Associated Outbreak of Mycobacterium abscessus: Implications on Transmission

Multicenter Evaluation of a Sequence-Based Protocol for Subtyping Shiga Toxins and Standardizing Stx Nomenclature

hicap: In Silico Serotyping of the Haemophilus influenzae Capsule Locus

Helicobacter pylori Infections in the Bronx, New York: Surveying Antibiotic Susceptibility and Strain Lineage by Whole-Genome Sequencing

Machine-Learning Model for Prediction of Cefepime Susceptibility in Escherichia coli from Whole-Genome Sequencing Data

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