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SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis

Science (American Association for the Advancement of Science), 2018-05, Vol.360 (6390), p.800-805

2018

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Sequencing of the Arabidopsis NOR2 reveals its distinct organization and tissue-specific rRNA ribosomal variants

Nature communications, 2021-01, Vol.12 (1), p.387-387, Article 387

2021

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TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

BMC evolutionary biology, 2004-06, Vol.4, p.18

2004

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A compendium of genome-wide sequence reads from NBS (nucleotide binding site) domains of resistance genes in the common potato

Scientific reports, 2020-07, Vol.10 (1), p.11392-11392, Article 11392

2020

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The genomic basis of circadian and circalunar timing adaptations in a midge

Nature (London), 2016-12, Vol.540 (7631), p.69-73

2016

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Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

Systematic biology, 2016-11, Vol.65 (6), p.997-1008

2016

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W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

Nucleic acids research, 2016-07, Vol.44 (W1), p.W232

2016

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Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects

Molecular biology and evolution, 2014-01, Vol.31 (1), p.239-249

2014

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UFBoot2: Improving the Ultrafast Bootstrap Approximation

Molecular biology and evolution, 2018-02, Vol.35 (2), p.518-522

2018

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Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase

eLife, 2019-02, Vol.8

2019

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Separable Roles for a Caenorhabditis elegans RMI1 Homolog in Promoting and Antagonizing Meiotic Crossovers Ensure Faithful Chromosome Inheritance

PLoS biology, 2016-03, Vol.14 (3), p.e1002412-e1002412

2016

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Likelihood-Mapping: A Simple Method to Visualize Phylogenetic Content of a Sequence Alignment

Proceedings of the National Academy of Sciences - PNAS, 1997-06, Vol.94 (13), p.6815-6819

1997

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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Molecular biology and evolution, 2020-05, Vol.37 (5), p.1530-1534

2020

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IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

Molecular biology and evolution, 2015-01, Vol.32 (1), p.268-274

2015

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Distribution and Phylogeny of Light-Oxygen-Voltage-Blue-Light-Signaling Proteins in the Three Kingdoms of Life

Journal of Bacteriology, 2009-12, Vol.191 (23), p.7234-7242

2009

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NextGenMap: fast and accurate read mapping in highly polymorphic genomes

Bioinformatics, 2013-11, Vol.29 (21), p.2790-2791

2013

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Accurate detection of complex structural variations using single-molecule sequencing

Nature methods, 2018-06, Vol.15 (6), p.461

2018

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Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes

Nature communications, 2018-04, Vol.9 (1), p.1517-17, Article 1517

2018

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GHOST: Recovering Historical Signal from Heterotachously Evolved Sequence Alignments

Systematic biology, 2020-03, Vol.69 (2), p.249

2020

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Updating benchtop sequencing performance comparison

Nature biotechnology, 2013-04, Vol.31 (4), p.294-296

2013

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A-type lamins bind both hetero- and euchromatin, the latter being regulated by lamina-associated polypeptide 2 alpha

Genome research, 2016-04, Vol.26 (4), p.462

2016

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HaMStR: profile hidden markov model based search for orthologs in ESTs

BMC evolutionary biology, 2009-07, Vol.9, p.157

2009

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MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation

BMC evolutionary biology, 2018-02, Vol.18 (1), p.11

2018

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Gruffi: an algorithm for computational removal of stressed cells from brain organoid transcriptomic datasets

The EMBO journal, 2022-09, Vol.41 (17), p.e111118-n/a

2022

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VARIFI-Web-Based Automatic Variant Identification, Filtering and Annotation of Amplicon Sequencing Data

Journal of personalized medicine, 2019-02, Vol.9 (1), p.10

2019

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SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis

Sequencing of the Arabidopsis NOR2 reveals its distinct organization and tissue-specific rRNA ribosomal variants

TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

A compendium of genome-wide sequence reads from NBS (nucleotide binding site) domains of resistance genes in the common potato

The genomic basis of circadian and circalunar timing adaptations in a midge

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects

UFBoot2: Improving the Ultrafast Bootstrap Approximation

Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase

Separable Roles for a Caenorhabditis elegans RMI1 Homolog in Promoting and Antagonizing Meiotic Crossovers Ensure Faithful Chromosome Inheritance

Likelihood-Mapping: A Simple Method to Visualize Phylogenetic Content of a Sequence Alignment

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

Distribution and Phylogeny of Light-Oxygen-Voltage-Blue-Light-Signaling Proteins in the Three Kingdoms of Life

NextGenMap: fast and accurate read mapping in highly polymorphic genomes

Accurate detection of complex structural variations using single-molecule sequencing

Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes

GHOST: Recovering Historical Signal from Heterotachously Evolved Sequence Alignments

Updating benchtop sequencing performance comparison

A-type lamins bind both hetero- and euchromatin, the latter being regulated by lamina-associated polypeptide 2 alpha

HaMStR: profile hidden markov model based search for orthologs in ESTs

MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation

Gruffi: an algorithm for computational removal of stressed cells from brain organoid transcriptomic datasets

VARIFI-Web-Based Automatic Variant Identification, Filtering and Annotation of Amplicon Sequencing Data

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