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Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env

Nature structural & molecular biology, 2015-07, Vol.22 (7), p.522-531

2015

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PLUG (Pruning of Local Unrealistic Geometries) removes restrictions on biophysical modeling for protein design

Proteins, structure, function, and bioinformatics, 2019-01, Vol.87 (1), p.62-73

Hallen, Mark A.

2019

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Altered nucleotide-microtubule coupling and increased mechanical output by a kinesin mutant

PloS one, 2012-10, Vol.7 (10), p.e47148-e47148

2012

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Dead-end elimination with perturbations (DEEPer): A provable protein design algorithm with continuous sidechain and backbone flexibility

Proteins, structure, function, and bioinformatics, 2013-01, Vol.81 (1), p.18-39

2013

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Ncd motor binding and transport in the spindle

Journal of cell science, 2008-11, Vol.121 (22), p.3834-3841

2008

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CATS (Coordinates of Atoms by Taylor Series): protein design with backbone flexibility in all locally feasible directions

Bioinformatics (Oxford, England), 2017-07, Vol.33 (14), p.i5-i12

2017

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OSPREY 3.0: Open‐source protein redesign for you, with powerful new features

Journal of computational chemistry, 2018-11, Vol.39 (30), p.2494-2507

2018

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comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Protein Design Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence

Journal of computational biology, 2016-05, Vol.23 (5), p.311-321

2016

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Compact Representation of Continuous Energy Surfaces for More Efficient Protein Design

Journal of chemical theory and computation, 2015-05, Vol.11 (5), p.2292-2306

2015

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microtubule-destabilizing kinesin motor regulates spindle length and anchoring in oocytes

The Journal of cell biology, 2008-02, Vol.180 (3), p.459-466

2008

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Fast gap-free enumeration of conformations and sequences for protein design

Proteins, structure, function, and bioinformatics, 2015-10, Vol.83 (10), p.1859-1877

2015

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LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid Rotamer-Like Efficiency

Journal of computational biology, 2017-06, Vol.24 (6), p.536-546

2017

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Mass Spectrometry- and Lysine Amidination-Based Protocol for Thermodynamic Analysis of Protein Folding and Ligand Binding Interactions

Analytical chemistry (Washington), 2011-05, Vol.83 (9), p.3555-3562

2011

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Fluorescence Recovery Kinetic Analysis of γ-Tubulin Binding to the Mitotic Spindle

Biophysical journal, 2008-09, Vol.95 (6), p.3048-3058

2008

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Anastral Spindle Assembly: A Mathematical Model

Biophysical journal, 2009-10, Vol.97 (8), p.2191-2201

2009

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Expanding the scope of quantitative FRAP analysis

Journal of theoretical biology, 2010-01, Vol.262 (2), p.295-305

2010

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Synthesis of Carboxylic Acid Monolayers by Ozonolysis of 10-Undecenyltrichlorosilane SAMs

Journal of physical chemistry. C, 2008-02, Vol.112 (6), p.2086-2090

2008

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Two-state displacement by the kinesin-14 Ncd stalk

Biophysical chemistry, 2011-03, Vol.154 (2), p.56-65

2011

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Anastral spindle assembly and γ-tubulin in Drosophila oocytes

BMC cell biology, 2011-01, Vol.12 (1), p.1, Article 1

2011

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LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-Rotamer-Like Efficiency

Biophysical journal, 2017-02, Vol.112 (3), p.194a-194a

2017

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Fast gap-free enumeration of conformations and sequences for protein design: Fast Conformation Search for Protein Design

Proteins, structure, function, and bioinformatics, 2015-10, Vol.83 (10), p.1859-1877

2015

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Increased Mechanical Output by a Kinesin Mutant

Biophysical journal, 2013-01, Vol.104 (2), p.326a-326a

2013

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Computing Conformational Entropy in Antibody Interfaces

Biophysical journal, 2014-01, Vol.106 (2), p.438a-438a

2014

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Microtubule Binding and Rotation of the Kinesin-14 Stalk

Biophysical journal, 2009-02, Vol.96 (3), p.509a-509a

2009

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Protein and Drug Design Algorithms Using Improved Biophysical Modeling

Hallen, Mark A

2016

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Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env

PLUG (Pruning of Local Unrealistic Geometries) removes restrictions on biophysical modeling for protein design

Altered nucleotide-microtubule coupling and increased mechanical output by a kinesin mutant

Dead-end elimination with perturbations (DEEPer): A provable protein design algorithm with continuous sidechain and backbone flexibility

Ncd motor binding and transport in the spindle

CATS (Coordinates of Atoms by Taylor Series): protein design with backbone flexibility in all locally feasible directions

OSPREY 3.0: Open‐source protein redesign for you, with powerful new features

comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Protein Design Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence

Compact Representation of Continuous Energy Surfaces for More Efficient Protein Design

microtubule-destabilizing kinesin motor regulates spindle length and anchoring in oocytes

Fast gap-free enumeration of conformations and sequences for protein design

LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid Rotamer-Like Efficiency

Mass Spectrometry- and Lysine Amidination-Based Protocol for Thermodynamic Analysis of Protein Folding and Ligand Binding Interactions

Fluorescence Recovery Kinetic Analysis of γ-Tubulin Binding to the Mitotic Spindle

Anastral Spindle Assembly: A Mathematical Model

Expanding the scope of quantitative FRAP analysis

Synthesis of Carboxylic Acid Monolayers by Ozonolysis of 10-Undecenyltrichlorosilane SAMs

Two-state displacement by the kinesin-14 Ncd stalk

Anastral spindle assembly and γ-tubulin in Drosophila oocytes

LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-Rotamer-Like Efficiency

Fast gap-free enumeration of conformations and sequences for protein design: Fast Conformation Search for Protein Design

Increased Mechanical Output by a Kinesin Mutant

Computing Conformational Entropy in Antibody Interfaces

Microtubule Binding and Rotation of the Kinesin-14 Stalk

Protein and Drug Design Algorithms Using Improved Biophysical Modeling

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