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Nanobodies from camelid mice and llamas neutralize SARS-CoV-2 variants

Nature (London), 2021-07, Vol.595 (7866), p.278-282

2021

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Structure-Based Design of a Fusion Glycoprotein Vaccine for Respiratory Syncytial Virus

Science (American Association for the Advancement of Science), 2013-11, Vol.342 (6158), p.592-598

2013

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Prefusion F-specific antibodies determine the magnitude of RSV neutralizing activity in human sera

Science translational medicine, 2015-10, Vol.7 (309), p.309ra162

2015

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mtx-COBRA: Subcellular localization prediction for bacterial proteins

Computers in biology and medicine, 2024-03, Vol.171, p.108114-108114, Article 108114

2024

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Fragment-based identification of druggable ‘hot spots’ of proteins using Fourier domain correlation techniques

Bioinformatics, 2009-03, Vol.25 (5), p.621-627

2009

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Structural conservation of druggable hot spots in protein–protein interfaces

Proceedings of the National Academy of Sciences - PNAS, 2011-08, Vol.108 (33), p.13528-13533

2011

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Application of asymmetric statistical potentials to antibody―protein docking

Bioinformatics (Oxford, England), 2012-10, Vol.28 (20), p.2608-2614

2012

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Improvement of antibody functionality by structure-guided paratope engraftment

Nature communications, 2019-02, Vol.10 (1), p.721-721, Article 721

2019

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Lattice engineering enables definition of molecular features allowing for potent small-molecule inhibition of HIV-1 entry

Nature communications, 2019-01, Vol.10 (1), p.47-11, Article 47

2019

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Structural Survey of Broadly Neutralizing Antibodies Targeting the HIV-1 Env Trimer Delineates Epitope Categories and Characteristics of Recognition

Structure (London), 2019-01, Vol.27 (1), p.196-206.e6

2019

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Vaccination induces maturation in a mouse model of diverse unmutated VRC01-class precursors to HIV-neutralizing antibodies with >50% breadth

Immunity (Cambridge, Mass.), 2021-02, Vol.54 (2), p.324-339.e8

2021

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Extended antibody-framework-to-antigen distance observed exclusively with broad HIV-1-neutralizing antibodies recognizing glycan-dense surfaces

Nature communications, 2021-11, Vol.12 (1), p.6470-6470, Article 6470

2021

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A Universal Approach to Optimize the Folding and Stability of Prefusion-Closed HIV-1 Envelope Trimers

Cell reports (Cambridge), 2018-04, Vol.23 (2), p.584-595

2018

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Structural basis of LAIR1 targeting by polymorphic Plasmodium RIFINs

Nature communications, 2021-07, Vol.12 (1), p.4226-4226, Article 4226

2021

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Delineating Antibody Recognition in Polyclonal Sera from Patterns of HIV-1 Isolate Neutralization

Science (American Association for the Advancement of Science), 2013-05, Vol.340 (6133), p.751-756

2013

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Accurate Prediction for Antibody Resistance of Clinical HIV-1 Isolates

Scientific reports, 2019-10, Vol.9 (1), p.14696-12, Article 14696

2019

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Complete functional mapping of infection- and vaccine-elicited antibodies against the fusion peptide of HIV

PLoS pathogens, 2018-07, Vol.14 (7), p.e1007159-e1007159

2018

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Completeness of HIV-1 Envelope Glycan Shield at Transmission Determines Neutralization Breadth

Cell reports (Cambridge), 2018-10, Vol.25 (4), p.893-908.e7

2018

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DeepSol: a deep learning framework for sequence-based protein solubility prediction

Bioinformatics, 2018-08, Vol.34 (15), p.2605-2613

2018

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Structure of Super-Potent Antibody CAP256-VRC26.25 in Complex with HIV-1 Envelope Reveals a Combined Mode of Trimer-Apex Recognition

Cell reports (Cambridge), 2020-04, Vol.31 (1), p.107488-107488, Article 107488

2020

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DARS (Decoys As the Reference State) Potentials for Protein-Protein Docking

Biophysical journal, 2008-11, Vol.95 (9), p.4217-4227

2008

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Computational prediction of N-linked glycosylation incorporating structural properties and patterns

Bioinformatics, 2012-09, Vol.28 (17), p.2249-2255

2012

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Antibodyomics: bioinformatics technologies for understanding B‐cell immunity to HIV‐1

Immunological reviews, 2017-01, Vol.275 (1), p.108-128

2017

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Cryo-EM Structures of SARS-CoV-2 Spike without and with ACE2 Reveal a pH-Dependent Switch to Mediate Endosomal Positioning of Receptor-Binding Domains

Nanobodies from camelid mice and llamas neutralize SARS-CoV-2 variants

Structure-Based Design of a Fusion Glycoprotein Vaccine for Respiratory Syncytial Virus

Prefusion F-specific antibodies determine the magnitude of RSV neutralizing activity in human sera

mtx-COBRA: Subcellular localization prediction for bacterial proteins

Fragment-based identification of druggable ‘hot spots’ of proteins using Fourier domain correlation techniques

Structural conservation of druggable hot spots in protein–protein interfaces

Application of asymmetric statistical potentials to antibody―protein docking

Improvement of antibody functionality by structure-guided paratope engraftment

Lattice engineering enables definition of molecular features allowing for potent small-molecule inhibition of HIV-1 entry

Structural Survey of Broadly Neutralizing Antibodies Targeting the HIV-1 Env Trimer Delineates Epitope Categories and Characteristics of Recognition

Vaccination induces maturation in a mouse model of diverse unmutated VRC01-class precursors to HIV-neutralizing antibodies with >50% breadth

Extended antibody-framework-to-antigen distance observed exclusively with broad HIV-1-neutralizing antibodies recognizing glycan-dense surfaces

A Universal Approach to Optimize the Folding and Stability of Prefusion-Closed HIV-1 Envelope Trimers

Structural basis of LAIR1 targeting by polymorphic Plasmodium RIFINs

Delineating Antibody Recognition in Polyclonal Sera from Patterns of HIV-1 Isolate Neutralization

Accurate Prediction for Antibody Resistance of Clinical HIV-1 Isolates

Consistent elicitation of cross-clade HIV-neutralizing responses achieved in guinea pigs after fusion peptide priming by repetitive envelope trimer boosting

Complete functional mapping of infection- and vaccine-elicited antibodies against the fusion peptide of HIV

Completeness of HIV-1 Envelope Glycan Shield at Transmission Determines Neutralization Breadth

DeepSol: a deep learning framework for sequence-based protein solubility prediction

Structure of Super-Potent Antibody CAP256-VRC26.25 in Complex with HIV-1 Envelope Reveals a Combined Mode of Trimer-Apex Recognition

DARS (Decoys As the Reference State) Potentials for Protein-Protein Docking

Computational prediction of N-linked glycosylation incorporating structural properties and patterns

Antibodyomics: bioinformatics technologies for understanding B‐cell immunity to HIV‐1

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