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Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface

PLoS computational biology, 2020-06, Vol.16 (6), p.e1007447-e1007447

2020

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A critical analysis of computational protein design with sparse residue interaction graphs

PLoS computational biology, 2017-03, Vol.13 (3), p.e1005346-e1005346

2017

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OSPREY 3.0: Open‐source protein redesign for you, with powerful new features

Journal of computational chemistry, 2018-11, Vol.39 (30), p.2494-2507

2018

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BBK (Branch and Bound Over K): A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces

Journal of computational biology, 2018-07, Vol.25 (7), p.726-739

2018

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Minimization-Aware Recursive K: A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape

Journal of computational biology, 2020-04, Vol.27 (4), p.550-564

2020

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BWM: A Novel, Provable, Ensemble-based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design

Journal of computational biology, 2016-06, Vol.23 (6), p.413-424

2016

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LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid Rotamer-Like Efficiency

Journal of computational biology, 2017-06, Vol.24 (6), p.536-546

2017

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Computational Analysis of Energy Landscapes Reveals Dynamic Features That Contribute to Binding of Inhibitors to CFTR-Associated Ligand

The journal of physical chemistry. B, 2019-12, Vol.123 (49), p.10441-10455

2019

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LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-Rotamer-Like Efficiency

Biophysical journal, 2017-02, Vol.112 (3), p.194a-194a

2017

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LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency

Research in Computational Molecular Biology, p.122-136

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Algorithmic Advances and Applications from RECOMB 2017

Cell systems, 2017-09, Vol.5 (3), p.176-186

2017

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BWM: A Novel, Provable, Ensemble-Based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design

Research in Computational Molecular Biology, 2015, Vol.9029, p.154-166

Przytycka, Teresa M

2015

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Minimization-Aware Recursive K∗\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$K^{}$$\end{document} (MARK∗\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt}

Research in Computational Molecular Biology, 2019, p.101-119

2019

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documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$BBK^$$\end{document} (Branch and Bound over \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document

Research in Computational Molecular Biology, 2017, p.157-172

2017

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Single-molecule imaging of chromatin remodelers reveals role of ATPase in promoting fast kinetics of target search and dissociation from chromatin

eLife, 2021-07, Vol.10

2021

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Focused Neuro-Otological Review of Superficial Siderosis of the Central Nervous System

Frontiers in neurology, 2018-05, Vol.9, p.358-358

2018

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Mutations in the vesicular trafficking protein annexin A11 are associated with amyotrophic lateral sclerosis

Science translational medicine, 2017-05, Vol.9 (388)

2017

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Seroprevalence, distribution, and risk factors for human leptospirosis in the United States Virgin Islands

PLoS neglected tropical diseases, 2022-11, Vol.16 (11), p.e0010880-e0010880

2022

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The epithelial sodium channel δ-subunit: new notes for an old song

American journal of physiology. Renal physiology, 2012, Vol.72 (2)

2012

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Assessing the Presidency of Ma Ying-jiu in Taiwan: Hopeful Beginning, Hopeless End?

1st, 2018

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A Tribute to Peter N. T. Wells, Emeritus Editor of Ultrasound in Medicine and Biology

Ultrasound in medicine & biology, 2007-10, Vol.33 (10), p.1676-1678

Jack Reid, John M

2007

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Performance of a storage system for supporting different video types and qualities

IEEE journal on selected areas in communications, 1996-09, Vol.14 (7), p.1314-1331

1996

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Design and evaluation of a generic software architecture for on-demand video servers

IEEE transactions on knowledge and data engineering, 1999-05, Vol.11 (3), p.406-424

1999

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Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface

A critical analysis of computational protein design with sparse residue interaction graphs

OSPREY 3.0: Open‐source protein redesign for you, with powerful new features

BBK (Branch and Bound Over K): A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces

Minimization-Aware Recursive K: A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape

BWM: A Novel, Provable, Ensemble-based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design

LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid Rotamer-Like Efficiency

Computational Analysis of Energy Landscapes Reveals Dynamic Features That Contribute to Binding of Inhibitors to CFTR-Associated Ligand

LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-Rotamer-Like Efficiency

LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency

Algorithmic Advances and Applications from RECOMB 2017

BWM: A Novel, Provable, Ensemble-Based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design

ALS-associated missense and nonsense TBK1 mutations can both cause loss of kinase function

Single-molecule imaging of chromatin remodelers reveals role of ATPase in promoting fast kinetics of target search and dissociation from chromatin

Focused Neuro-Otological Review of Superficial Siderosis of the Central Nervous System

Mutations in the vesicular trafficking protein annexin A11 are associated with amyotrophic lateral sclerosis

Longitudinal lung function and gas transfer in individuals with idiopathic pulmonary fibrosis: a genome-wide association study

Seroprevalence, distribution, and risk factors for human leptospirosis in the United States Virgin Islands

The epithelial sodium channel δ-subunit: new notes for an old song

Assessing the Presidency of Ma Ying-jiu in Taiwan: Hopeful Beginning, Hopeless End?

A Tribute to Peter N. T. Wells, Emeritus Editor of Ultrasound in Medicine and Biology

Performance of a storage system for supporting different video types and qualities

Design and evaluation of a generic software architecture for on-demand video servers

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