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BEAST 2: a software platform for Bayesian evolutionary analysis

PLoS computational biology, 2014-04, Vol.10 (4), p.e1003537

2014

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Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

Systematic biology, 2018-09, Vol.67 (5), p.901-904

2018

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Bayesian random local clocks, or one rate to rule them all

BMC biology, 2010-08, Vol.8 (1), p.114-114, Article 114

2010

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Bayesian phylogenetics with BEAUti and the BEAST 1.7

Molecular biology and evolution, 2012-08, Vol.29 (8), p.1969-1973

2012

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Bayesian phylogeography finds its roots

PLoS computational biology, 2009-09, Vol.5 (9), p.e1000520-e1000520

2009

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Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2

PLoS pathogens, 2014-02, Vol.10 (2), p.e1003932-e1003932

2014

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The emergence of SARS-CoV-2 in Europe and North America

Science (American Association for the Advancement of Science), 2020-10, Vol.370 (6516), p.564-570

2020

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SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes

Molecular biology and evolution, 2016-08, Vol.33 (8), p.2167-2169

2016

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Evaluating large-scale propensity score performance through real-world and synthetic data experiments

International journal of epidemiology, 2018-12, Vol.47 (6), p.2005-2014

2018

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Many-core algorithms for statistical phylogenetics

Bioinformatics, 2009-06, Vol.25 (11), p.1370-1376

2009

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Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10

Virus evolution, 2018-01, Vol.4 (1), p.vey016-vey016

2018

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Genealogical Working Distributions for Bayesian Model Testing with Phylogenetic Uncertainty

Systematic biology, 2016-03, Vol.65 (2), p.250-264

2016

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Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

Molecular biology and evolution, 2012-09, Vol.29 (9), p.2157-2167

2012

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Untangling introductions and persistence in COVID-19 resurgence in Europe

Nature (London), 2021-07, Vol.595 (7869), p.713-717

2021

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SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

Bioinformatics, 2011-10, Vol.27 (20), p.2910-2912

2011

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Prior-Preconditioned Conjugate Gradient Method for Accelerated Gibbs Sampling in "Large n, Large p" Bayesian Sparse Regression

Journal of the American Statistical Association, 2023-10, Vol.118 (544), p.2468-2481

2023

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COVID-19: Epidemiology, Evolution, and Cross-Disciplinary Perspectives

Trends in molecular medicine, 2020-05, Vol.26 (5), p.483-495

2020

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BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics

Systematic biology, 2019-11, Vol.68 (6), p.1052-1061

2019

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Comprehensive comparative effectiveness and safety of first-line antihypertensive drug classes: a systematic, multinational, large-scale analysis

The Lancet (British edition), 2019-11, Vol.394 (10211), p.1816-1826

2019

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Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

Molecular biology and evolution, 2013-02, Vol.30 (2), p.239-243

2013

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Phylogeography takes a relaxed random walk in continuous space and time

Molecular biology and evolution, 2010-08, Vol.27 (8), p.1877-1885

2010

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Empirical confidence interval calibration for population-level effect estimation studies in observational healthcare data

Proceedings of the National Academy of Sciences - PNAS, 2018-03, Vol.115 (11), p.2571-2577

2018

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The early spread and epidemic ignition of HIV-1 in human populations

Science (American Association for the Advancement of Science), 2014-10, Vol.346 (6205), p.56-61

2014

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Macroevolutionary dynamics of climatic niche space

Proceedings of the Royal Society. B, Biological sciences, 2022-05, Vol.289 (1975), p.20220091-20220091

2022

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Virome characterization of game animals in China reveals a spectrum of emerging pathogens

Cell, 2022-03, Vol.185 (7), p.1117-1129.e8

2022

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BEAST 2: a software platform for Bayesian evolutionary analysis

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

Bayesian random local clocks, or one rate to rule them all

Bayesian phylogenetics with BEAUti and the BEAST 1.7

Bayesian phylogeography finds its roots

Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2

The emergence of SARS-CoV-2 in Europe and North America

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes

Evaluating large-scale propensity score performance through real-world and synthetic data experiments

Many-core algorithms for statistical phylogenetics

Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10

Genealogical Working Distributions for Bayesian Model Testing with Phylogenetic Uncertainty

Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

Untangling introductions and persistence in COVID-19 resurgence in Europe

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

Prior-Preconditioned Conjugate Gradient Method for Accelerated Gibbs Sampling in "Large n, Large p" Bayesian Sparse Regression

COVID-19: Epidemiology, Evolution, and Cross-Disciplinary Perspectives

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics

Comprehensive comparative effectiveness and safety of first-line antihypertensive drug classes: a systematic, multinational, large-scale analysis

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics

Phylogeography takes a relaxed random walk in continuous space and time

Empirical confidence interval calibration for population-level effect estimation studies in observational healthcare data

The early spread and epidemic ignition of HIV-1 in human populations

Macroevolutionary dynamics of climatic niche space

Virome characterization of game animals in China reveals a spectrum of emerging pathogens

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