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BEAST 2: a software platform for Bayesian evolutionary analysis

PLoS computational biology, 2014-04, Vol.10 (4), p.e1003537

2014

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Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

Systematic biology, 2018-09, Vol.67 (5), p.901

2018

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The emergence of SARS-CoV-2 in Europe and North America

Science (American Association for the Advancement of Science), 2020-10, Vol.370 (6516), p.564-570

2020

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SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes

Molecular biology and evolution, 2016-08, Vol.33 (8), p.2167-2169

2016

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Bayesian random local clocks, or one rate to rule them all

BMC biology, 2010-08, Vol.8 (1), p.114-114, Article 114

2010

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Many-core algorithms for statistical phylogenetics

Bioinformatics, 2009-06, Vol.25 (11), p.1370-1376

2009

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Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10

Virus evolution, 2018-01, Vol.4 (1), p.vey016-vey016

2018

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Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

Molecular biology and evolution, 2012-09, Vol.29 (9), p.2157-2167

2012

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SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

Bioinformatics, 2011-10, Vol.27 (20), p.2910-2912

2011

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Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2

PLoS pathogens, 2014-02, Vol.10 (2), p.e1003932-e1003932

2014

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Bayesian phylogeography finds its roots

PLoS computational biology, 2009-09, Vol.5 (9), p.e1000520-e1000520

2009

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Comprehensive comparative effectiveness and safety of first-line antihypertensive drug classes: a systematic, multinational, large-scale analysis

The Lancet (British edition), 2019-11, Vol.394 (10211), p.1816-1826

2019

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Comparison of Cardiovascular and Safety Outcomes of Chlorthalidone vs Hydrochlorothiazide to Treat Hypertension

JAMA internal medicine, 2020-04, Vol.180 (4), p.542

2020

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The early spread and epidemic ignition of HIV-1 in human populations

Science (American Association for the Advancement of Science), 2014-10, Vol.346 (6205), p.56-61

2014

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Empirical confidence interval calibration for population-level effect estimation studies in observational healthcare data

Proceedings of the National Academy of Sciences - PNAS, 2018-03, Vol.115 (11), p.2571-2577

2018

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Stability-mediated epistasis constrains the evolution of an influenza protein

eLife, 2013-05, Vol.2, p.e00631-e00631

2013

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Virome characterization of game animals in China reveals a spectrum of emerging pathogens

Cell, 2022-03, Vol.185 (7), p.1117-1129.e8

2022

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Untangling introductions and persistence in COVID-19 resurgence in Europe

Nature (London), 2021-07, Vol.595 (7869), p.713-717

2021

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Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2

Nature communications, 2020-10, Vol.11 (1), p.5110-5110, Article 5110

2020

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The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2

Science (American Association for the Advancement of Science), 2022-08, Vol.377 (6609), p.960-966

2022

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Interpreting observational studies: why empirical calibration is needed to correct p-values

Statistics in medicine, 2014-01, Vol.33 (2), p.209-218

2014

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Mapping the Origins and Expansion of the Indo-European Language Family

Science (American Association for the Advancement of Science), 2012-08, Vol.337 (6097), p.957-960

2012

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Accelerating Bayesian inference of dependency between mixed-type biological traits

PLoS computational biology, 2023-08, Vol.19 (8), p.e1011419-e1011419

2023

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Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction

PLoS computational biology, 2017-02, Vol.13 (2), p.e1005389-e1005389

2017

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BEAST 2: a software platform for Bayesian evolutionary analysis

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

The emergence of SARS-CoV-2 in Europe and North America

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes

Bayesian random local clocks, or one rate to rule them all

Many-core algorithms for statistical phylogenetics

Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10

Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2

Bayesian phylogeography finds its roots

Comprehensive comparative effectiveness and safety of first-line antihypertensive drug classes: a systematic, multinational, large-scale analysis

Comparison of Cardiovascular and Safety Outcomes of Chlorthalidone vs Hydrochlorothiazide to Treat Hypertension

The early spread and epidemic ignition of HIV-1 in human populations

Empirical confidence interval calibration for population-level effect estimation studies in observational healthcare data

Stability-mediated epistasis constrains the evolution of an influenza protein

Virome characterization of game animals in China reveals a spectrum of emerging pathogens

Untangling introductions and persistence in COVID-19 resurgence in Europe

Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2

The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2

Interpreting observational studies: why empirical calibration is needed to correct p-values

Mapping the Origins and Expansion of the Indo-European Language Family

Accelerating Bayesian inference of dependency between mixed-type biological traits

Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations

Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction

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