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Sequence capture of ultraconserved elements from bird museum specimens

Molecular ecology resources, 2016-09, Vol.16 (5), p.1189-1203

2016

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A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

PloS one, 2013-01, Vol.8 (1), p.e54848-e54848

2013

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Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales

Systematic biology, 2012-10, Vol.61 (5), p.717-726

2012

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Applications of next-generation sequencing to phylogeography and phylogenetics

Molecular phylogenetics and evolution, 2013-02, Vol.66 (2), p.526-538

2013

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Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics

Molecular phylogenetics and evolution, 2016-01, Vol.94 (Pt A), p.447-462

2016

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A rapid and cost-effective pipeline for digitization of museum specimens with 3D photogrammetry

PloS one, 2020-08, Vol.15 (8), p.e0236417-e0236417

2020

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High phylogenetic utility of an ultraconserved element probe set designed for Arachnida

Molecular ecology resources, 2017-07, Vol.17 (4), p.812-823

2017

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Temporal stability of the hybrid zone between Calocitta magpie‐jays revealed through comparison of museum specimens and iNaturalist photos

Ecology and evolution, 2023-03, Vol.13 (3), p.e9863-n/a

2023

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Recent postglacial range expansion drives the rapid diversification of a songbird lineage in the genus Junco

Proceedings of the Royal Society. B, Biological sciences, 2007-11, Vol.274 (1626), p.2653

2007

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The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch

Microbiome, 2018-09, Vol.6 (1), p.167-167, Article 167

2018

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Combining ultraconserved elements and mtDNA data to uncover lineage diversity in a Mexican highland frog ( Sarcohyla ; Hylidae)

PeerJ (San Francisco, CA), 2018-12, Vol.6, p.e6045-e6045, Article e6045

2018

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Niche expansion leads to small-scale adaptive divergence along an elevation gradient in a medium-sized passerine bird

Proceedings of the Royal Society. B, Biological sciences, 2008-09, Vol.275 (1647), p.2155

2008

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An elevational shift facilitated the Mesoamerican diversification of Azure‐hooded Jays (Cyanolyca cucullata) during the Great American Biotic Interchange

Ecology and evolution, 2023-08, Vol.13 (8), p.e10411-n/a

2023

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Comparison of ultraconserved elements (UCEs) to microsatellite markers for the study of avian hybrid zones: a test in Aphelocoma jays

BMC research notes, 2019-07, Vol.12 (1), p.456-456, Article 456

2019

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CALIBRATING DIVERGENCE TIMES ON SPECIES TREES VERSUS GENE TREES: IMPLICATIONS FOR SPECIATION HISTORY OF APHELOCOMA JAYS

Evolution, 2011-01, Vol.65 (1), p.184-202

2011

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DOES NICHE DIVERGENCE ACCOMPANY ALLOPATRIC DIVERGENCE IN APHELOCOMA JAYS AS PREDICTED UNDER ECOLOGICAL SPECIATION?: INSIGHTS FROM TESTS WITH NICHE MODELS

Evolution, 2010-05, Vol.64 (5), p.1231-1244

2010

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Integrating paleoecology and genetics of bird populations in two sky island archipelagos

BMC biology, 2008-06, Vol.6 (1), p.28-28, Article 28

2008

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Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis

Genome research, 2012-04, Vol.22 (4), p.746

2012

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More than skin and bones: Comparing extraction methods and alternative sources of DNA from avian museum specimens

Molecular ecology resources, 2020-09, Vol.20 (5), p.1220-1227

2020

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The drivers of tropical speciation

Nature (London), 2014-11, Vol.515 (7527), p.406-409

2014

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More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs

Biology letters (2005), 2012-10, Vol.8 (5), p.783-786

2012

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Dense Geographic and Genomic Sampling Reveals Paraphyly and a Cryptic Lineage in a Classic Sibling Species Complex

Systematic biology, 2019-11, Vol.68 (6), p.956

2019

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Cryptic diversity in the Mexican highlands: Thousands of UCE loci help illuminate phylogenetic relationships, species limits and divergence times of montane rattlesnakes (Viperidae: Crotalus)

Molecular ecology resources, 2019-03, Vol.19 (2), p.349-365

2019

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Genome‐wide signals of drift and local adaptation during rapid lineage divergence in a songbird

Molecular ecology, 2018-12, Vol.27 (24), p.5137-5153

2018

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Sequence capture of ultraconserved elements from bird museum specimens

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales

Applications of next-generation sequencing to phylogeography and phylogenetics

Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics

A rapid and cost-effective pipeline for digitization of museum specimens with 3D photogrammetry

High phylogenetic utility of an ultraconserved element probe set designed for Arachnida

Temporal stability of the hybrid zone between Calocitta magpie‐jays revealed through comparison of museum specimens and iNaturalist photos

Genomic approaches to understanding population divergence and speciation in birds

Recent postglacial range expansion drives the rapid diversification of a songbird lineage in the genus Junco

The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch

Combining ultraconserved elements and mtDNA data to uncover lineage diversity in a Mexican highland frog ( Sarcohyla ; Hylidae)

Niche expansion leads to small-scale adaptive divergence along an elevation gradient in a medium-sized passerine bird

An elevational shift facilitated the Mesoamerican diversification of Azure‐hooded Jays (Cyanolyca cucullata) during the Great American Biotic Interchange

Comparison of ultraconserved elements (UCEs) to microsatellite markers for the study of avian hybrid zones: a test in Aphelocoma jays

CALIBRATING DIVERGENCE TIMES ON SPECIES TREES VERSUS GENE TREES: IMPLICATIONS FOR SPECIATION HISTORY OF APHELOCOMA JAYS

DOES NICHE DIVERGENCE ACCOMPANY ALLOPATRIC DIVERGENCE IN APHELOCOMA JAYS AS PREDICTED UNDER ECOLOGICAL SPECIATION?: INSIGHTS FROM TESTS WITH NICHE MODELS

Integrating paleoecology and genetics of bird populations in two sky island archipelagos

Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis

More than skin and bones: Comparing extraction methods and alternative sources of DNA from avian museum specimens

The drivers of tropical speciation

More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs

Dense Geographic and Genomic Sampling Reveals Paraphyly and a Cryptic Lineage in a Classic Sibling Species Complex

Cryptic diversity in the Mexican highlands: Thousands of UCE loci help illuminate phylogenetic relationships, species limits and divergence times of montane rattlesnakes (Viperidae: Crotalus)

Genome‐wide signals of drift and local adaptation during rapid lineage divergence in a songbird

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