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Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model

BMC evolutionary biology, 2012-10, Vol.12, p.196

2012

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How to fail at species delimitation

Molecular ecology, 2013-09, Vol.22 (17), p.4369-4383

2013

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Multilocus Species Delimitation in a Complex of Morphologically Conserved Trapdoor Spiders (Mygalomorphae, Antrodiaetidae, Aliatypus)

Systematic biology, 2013-11, Vol.62 (6), p.805-823

2013

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The role of multiple Pleistocene refugia in promoting diversification in the Pacific Northwest

Molecular ecology, 2022-08, Vol.31 (16), p.4402-4416

2022

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Comparative Gut Microbiota of 59 Neotropical Bird Species

Frontiers in microbiology, 2015-12, Vol.6, p.1403-1403

2015

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Predicting plant conservation priorities on a global scale

Proceedings of the National Academy of Sciences - PNAS, 2018-12, Vol.115 (51), p.13027-13032

2018

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SpedeSTEM: a rapid and accurate method for species delimitation

Molecular ecology resources, 2011-05, Vol.11 (3), p.473-480

2011

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Applications of next-generation sequencing to phylogeography and phylogenetics

Molecular phylogenetics and evolution, 2013-02, Vol.66 (2), p.526-538

2013

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The impacts of fine-tuning, phylogenetic distance, and sample size on big-data bioacoustics

PloS one, 2022-12, Vol.17 (12), p.e0278522-e0278522

2022

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Geographical range size and latitude predict population genetic structure in a global survey

Biology letters (2005), 2018-01, Vol.14 (1), p.20170566-20170566

2018

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Do ecological communities disperse across biogeographic barriers as a unit?

Molecular ecology, 2017-07, Vol.26 (13), p.3533-3545

2017

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Species Delimitation Using a Combined Coalescent and Information-Theoretic Approach: An Example from North American Myotis Bats

Systematic biology, 2010-07, Vol.59 (4), p.400-414

2010

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INTEGRATING COALESCENT AND ECOLOGICAL NICHE MODELING IN COMPARATIVE PHYLOGEOGRAPHY

Evolution, 2007-06, Vol.61 (6), p.1439-1454

2007

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Reduced representation approaches produce similar results to whole genome sequencing for some common phylogeographic analyses

PloS one, 2023-11, Vol.18 (11), p.e0291941-e0291941

2023

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Estimating Species Phylogeny from Gene-Tree Probabilities Despite Incomplete Lineage Sorting: An Example from Melanoplus Grasshoppers

Systematic biology, 2007-06, Vol.56 (3), p.400-411

2007

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Assessing model adequacy for Bayesian Skyline plots using posterior predictive simulation

PloS one, 2022-07, Vol.17 (7), p.e0269438-e0269438

2022

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phylogatR: Phylogeographic data aggregation and repurposing

Molecular ecology resources, 2022-11, Vol.22 (8), p.2830-2842

2022

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Combining allele frequency and tree‐based approaches improves phylogeographic inference from natural history collections

Molecular ecology, 2018-02, Vol.27 (4), p.1012-1024

2018

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Comparing range evolution in two western Plethodon salamanders: glacial refugia, competition, ecological niches, and spatial sorting

Journal of biogeography, 2016-11, Vol.43 (11), p.2237-2249

2016

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Predicting migration routes for three species of migratory bats using species distribution models

PeerJ (San Francisco, CA), 2021-04, Vol.9, p.e11177-e11177, Article e11177

2021

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A road map for molecular ecology

Molecular ecology, 2013-05, Vol.22 (10), p.2605-2626

2013

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Sampling locality is more detectable than taxonomy or ecology in the gut microbiota of the brood-parasitic Brown-headed Cowbird (Molothrus ater)

PeerJ (San Francisco, CA), 2014-03, Vol.2, p.e321-e321

2014

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Geographic source of bats killed at wind-energy facilities in the eastern United States

PeerJ (San Francisco, CA), 2024-02, Vol.12, p.e16796-e16796, Article e16796

2024

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Comparative phylogeography of mutualists and the effect of the host on the genetic structure of its partners

Biological journal of the Linnean Society, 2014-12, Vol.113 (4), p.1021-1035

2014

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Coupling Genetic and Ecological-Niche Models to Examine How Past Population Distributions Contribute to Divergence

Current biology, 2007-06, Vol.17 (11), p.940-946

2007

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Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model

How to fail at species delimitation

Multilocus Species Delimitation in a Complex of Morphologically Conserved Trapdoor Spiders (Mygalomorphae, Antrodiaetidae, Aliatypus)

The role of multiple Pleistocene refugia in promoting diversification in the Pacific Northwest

Comparative Gut Microbiota of 59 Neotropical Bird Species

Predicting plant conservation priorities on a global scale

SpedeSTEM: a rapid and accurate method for species delimitation

Applications of next-generation sequencing to phylogeography and phylogenetics

The impacts of fine-tuning, phylogenetic distance, and sample size on big-data bioacoustics

Geographical range size and latitude predict population genetic structure in a global survey

Do ecological communities disperse across biogeographic barriers as a unit?

Species Delimitation Using a Combined Coalescent and Information-Theoretic Approach: An Example from North American Myotis Bats

INTEGRATING COALESCENT AND ECOLOGICAL NICHE MODELING IN COMPARATIVE PHYLOGEOGRAPHY

Reduced representation approaches produce similar results to whole genome sequencing for some common phylogeographic analyses

Estimating Species Phylogeny from Gene-Tree Probabilities Despite Incomplete Lineage Sorting: An Example from Melanoplus Grasshoppers

Assessing model adequacy for Bayesian Skyline plots using posterior predictive simulation

phylogatR: Phylogeographic data aggregation and repurposing

Combining allele frequency and tree‐based approaches improves phylogeographic inference from natural history collections

Comparing range evolution in two western Plethodon salamanders: glacial refugia, competition, ecological niches, and spatial sorting

Predicting migration routes for three species of migratory bats using species distribution models

A road map for molecular ecology

Sampling locality is more detectable than taxonomy or ecology in the gut microbiota of the brood-parasitic Brown-headed Cowbird (Molothrus ater)

Geographic source of bats killed at wind-energy facilities in the eastern United States

Comparative phylogeography of mutualists and the effect of the host on the genetic structure of its partners

Coupling Genetic and Ecological-Niche Models to Examine How Past Population Distributions Contribute to Divergence

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