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IslandViewer: an integrated interface for computational identification and visualization of genomic islands

Bioinformatics, 2009-03, Vol.25 (5), p.664-665

2009

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Investigation of the impact of commonly used medications on the oral microbiome of individuals living without major chronic conditions

PloS one, 2021-12, Vol.16 (12), p.e0261032-e0261032

2021

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Cross-study analyses of microbial abundance using generalized common factor methods

BMC bioinformatics, 2023-10, Vol.24 (1), p.1-380, Article 380

2023

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Detecting genomic islands using bioinformatics approaches

Nature reviews. Microbiology, 2010-05, Vol.8 (5), p.373-382

2010

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Differences in adiposity and diet quality among individuals with inflammatory bowel disease in Eastern Canada

PloS one, 2018-07, Vol.13 (7), p.e0200580-e0200580

2018

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GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework

PloS one, 2013-07, Vol.8 (7), p.e69885

2013

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Evaluation of genomic island predictors using a comparative genomics approach

BMC bioinformatics, 2008-08, Vol.9 (1), p.329-329, Article 329

2008

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The association of virulence factors with genomic islands

PloS one, 2009-12, Vol.4 (12), p.e8094-e8094

2009

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Microbiome differential abundance methods produce different results across 38 datasets

Nature communications, 2022-01, Vol.13 (1), p.342-342, Article 342

2022

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Enhancement of the gut barrier integrity by a microbial metabolite through the Nrf2 pathway

Nature communications, 2019-01, Vol.10 (1), p.89-89, Article 89

2019

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Nature biotechnology, 2013-09, Vol.31 (9), p.814-821

2013

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Taxonomic differences of gut microbiomes drive cellulolytic enzymatic potential within hind-gut fermenting mammals

PloS one, 2017-12, Vol.12 (12), p.e0189404-e0189404

2017

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"Available upon request": not good enough for microbiome data

Microbiome, 2018-01, Vol.6 (1), p.8-8, Article 8

2018

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Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research

mSystems, 2017-01, Vol.2 (1)

2017

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Multi-omics differentially classify disease state and treatment outcome in pediatric Crohn's disease

Microbiome, 2018-01, Vol.6 (1), p.13-13, Article 13

2018

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Investigating the oral microbiome in retrospective and prospective cases of prostate, colon, and breast cancer

NPJ biofilms and microbiomes, 2023-05, Vol.9 (1), p.23-23, Article 23

2023

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Functional biogeography of ocean microbes revealed through non-negative matrix factorization

PloS one, 2012-09, Vol.7 (9), p.e43866-e43866

2012

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Exploring the microbiome of oral epithelial dysplasia as a predictor of malignant progression

BMC oral health, 2023-04, Vol.23 (1), p.206-206, Article 206

2023

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Changes to Soil Microbiome Resulting from Synergetic Effects of Fungistatic Compounds Pyrimethanil and Fluopyram in Lowbush Blueberry Agriculture, with Nine Fungicide Products Tested

Microorganisms (Basel), 2023-02, Vol.11 (2), p.410

2023

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Identifying biases and their potential solutions in human microbiome studies

Microbiome, 2021-05, Vol.9 (1), p.113-113, Article 113

2021

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Predicting the Functional Potential of the Microbiome from Marker Genes Using PICRUSt

Methods in molecular biology (Clifton, N.J.), 2018, Vol.1849, p.169

2018

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IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis

Nucleic acids research, 2015-07, Vol.43 (W1), p.W104

2015

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Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes

Genome biology and evolution, 2019-10, Vol.11 (10), p.2750-2766

2019

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Correction to: A multi-OMIC characterisation of biodegradation and microbial community succession within the PET plastisphere

Microbiome, 2021-07, Vol.9 (1), p.1-155, Article 155

2021

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Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux

PloS one, 2012-07, Vol.7 (7), p.e41389-e41389

2012

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IslandViewer: an integrated interface for computational identification and visualization of genomic islands

Investigation of the impact of commonly used medications on the oral microbiome of individuals living without major chronic conditions

Cross-study analyses of microbial abundance using generalized common factor methods

Detecting genomic islands using bioinformatics approaches

Differences in adiposity and diet quality among individuals with inflammatory bowel disease in Eastern Canada

GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework

Evaluation of genomic island predictors using a comparative genomics approach

The association of virulence factors with genomic islands

Microbiome differential abundance methods produce different results across 38 datasets

Enhancement of the gut barrier integrity by a microbial metabolite through the Nrf2 pathway

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Taxonomic differences of gut microbiomes drive cellulolytic enzymatic potential within hind-gut fermenting mammals

"Available upon request": not good enough for microbiome data

Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research

Multi-omics differentially classify disease state and treatment outcome in pediatric Crohn's disease

Investigating the oral microbiome in retrospective and prospective cases of prostate, colon, and breast cancer

Functional biogeography of ocean microbes revealed through non-negative matrix factorization

Exploring the microbiome of oral epithelial dysplasia as a predictor of malignant progression

Changes to Soil Microbiome Resulting from Synergetic Effects of Fungistatic Compounds Pyrimethanil and Fluopyram in Lowbush Blueberry Agriculture, with Nine Fungicide Products Tested

Identifying biases and their potential solutions in human microbiome studies

Predicting the Functional Potential of the Microbiome from Marker Genes Using PICRUSt

IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis

Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes

Correction to: A multi-OMIC characterisation of biodegradation and microbial community succession within the PET plastisphere

Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux

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