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Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors

PLoS computational biology, 2017-04, Vol.13 (4), p.e1005460-e1005460

2017

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Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline

Cell, 2019-01, Vol.176 (1-2), p.295-305.e10

2019

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A G(enomic)P(ositioning)S(ystem) for Plant RNAPII Transcription

Trends in plant science, 2020-08, Vol.25 (8), p.744-764

2020

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Transcriptome Responses to Combinations of Stresses in Arabidopsis

Plant physiology (Bethesda), 2013-04, Vol.161 (4), p.1783-1794

2013

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Double-Stranded RNA Is Produced by Positive-Strand RNA Viruses and DNA Viruses but Not in Detectable Amounts by Negative-Strand RNA Viruses

Journal of Virology, 2006-05, Vol.80 (10), p.5059-5064

2006

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Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

Journal of Clinical Microbiology, 2012-04, Vol.50 (4), p.1355-1361

2012

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Transcriptome analysis of root‐knot nematode (Meloidogyne incognita)‐infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses

Molecular plant pathology, 2018-03, Vol.19 (3), p.615-633

2018

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Metagenomic species profiling using universal phylogenetic marker genes

Nature methods, 2013-12, Vol.10 (12), p.1196-1199

2013

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Benchmarking of methods for genomic taxonomy

Journal of clinical microbiology, 2014-05, Vol.52 (5), p.1529-1539

2014

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Taxometer: Improving taxonomic classification of metagenomics contigs

Nature communications, 2024-09, Vol.15 (1), p.8357-9, Article 8357

2024

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The genome of a Late Pleistocene human from a Clovis burial site in western Montana

Nature (London), 2014-02, Vol.506 (7487), p.225-229

2014

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Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers

Science (American Association for the Advancement of Science), 2017-11, Vol.358 (6363), p.659-662

2017

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Genome binning of viral entities from bulk metagenomics data

Nature communications, 2022-02, Vol.13 (1), p.965-965, Article 965

2022

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Proteasomal degradation of herpes simplex virus capsids in macrophages releases DNA to the cytosol for recognition by DNA sensors

The Journal of immunology (1950), 2013-03, Vol.190 (5), p.2311-2319

2013

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Physiological and Genetic Adaptations to Diving in Sea Nomads

Cell, 2018-04, Vol.173 (3), p.569-580.e15

2018

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Machine learning and deep learning applications in microbiome research

ISME Communications, 2022-10, Vol.2 (1)

2022

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Rare truncating variants in the sarcomeric protein titin associate with familial and early-onset atrial fibrillation

Nature communications, 2018-10, Vol.9 (1), p.4316-11, Article 4316

2018

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Imputation of label-free quantitative mass spectrometry-based proteomics data using self-supervised deep learning

Nature communications, 2024-06, Vol.15 (1), p.5405-15, Article 5405

2024

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transcriptionally active regions in the genome of Bacillus subtilis

Molecular microbiology, 2009-09, Vol.73 (6), p.1043-1057

2009

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An assessment of the value of deep neural networks in genetic risk prediction for surgically relevant outcomes

PloS one, 2024-07, Vol.19 (7), p.e0294368

2024

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Biosynthesis of bioactive diterpenoids in the medicinal plant Vitex agnus‐castus

The Plant journal : for cell and molecular biology, 2018-03, Vol.93 (5), p.943-958

2018

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Microbial community structure of Arctic multiyear sea ice and surface seawater by 454 sequencing of the 16S RNA gene

The ISME Journal, 2012-01, Vol.6 (1), p.11-20

2012

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Transcriptome profiling of brown adipose tissue during cold exposure reveals extensive regulation of glucose metabolism

American journal of physiology: endocrinology and metabolism, 2015-03, Vol.308 (5), p.E380-E392

2015

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Virus-cell fusion as a trigger of innate immunity dependent on the adaptor STING

Nature immunology, 2012-08, Vol.13 (8), p.737-743

2012

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Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors

Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline

A G(enomic)P(ositioning)S(ystem) for Plant RNAPII Transcription

Transcriptome Responses to Combinations of Stresses in Arabidopsis

Double-Stranded RNA Is Produced by Positive-Strand RNA Viruses and DNA Viruses but Not in Detectable Amounts by Negative-Strand RNA Viruses

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

Transcriptome analysis of root‐knot nematode (Meloidogyne incognita)‐infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses

Metagenomic species profiling using universal phylogenetic marker genes

Benchmarking of methods for genomic taxonomy

Taxometer: Improving taxonomic classification of metagenomics contigs

The genome of a Late Pleistocene human from a Clovis burial site in western Montana

Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers

Genome binning of viral entities from bulk metagenomics data

Proteasomal degradation of herpes simplex virus capsids in macrophages releases DNA to the cytosol for recognition by DNA sensors

Physiological and Genetic Adaptations to Diving in Sea Nomads

Self-protection strategies and health behaviour in patients with inflammatory rheumatic diseases during the COVID-19 pandemic: results and predictors in more than 12 000 patients with inflammatory rheumatic diseases followed in the Danish DANBIO registry

Machine learning and deep learning applications in microbiome research

Rare truncating variants in the sarcomeric protein titin associate with familial and early-onset atrial fibrillation

Imputation of label-free quantitative mass spectrometry-based proteomics data using self-supervised deep learning

transcriptionally active regions in the genome of Bacillus subtilis

An assessment of the value of deep neural networks in genetic risk prediction for surgically relevant outcomes

Biosynthesis of bioactive diterpenoids in the medicinal plant Vitex agnus‐castus

Microbial community structure of Arctic multiyear sea ice and surface seawater by 454 sequencing of the 16S RNA gene

Transcriptome profiling of brown adipose tissue during cold exposure reveals extensive regulation of glucose metabolism

Virus-cell fusion as a trigger of innate immunity dependent on the adaptor STING

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