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Functional and quantitative proteomics using SILAC

Nature reviews. Molecular cell biology, 2006-12, Vol.7 (12), p.952-958

Mann, Matthias

2006

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The ever expanding scope of electrospray mass spectrometry-a 30 year journey

Nature communications, 2019-09, Vol.10 (1), p.3744-3, Article 3744

Mann, Matthias

2019

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Mass-spectrometric exploration of proteome structure and function

Nature (London), 2016-09, Vol.537 (7620), p.347-355

2016

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1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data

BMC bioinformatics, 2012, Vol.13 Suppl 16 (Suppl 16), p.S12-S12, Article S12

2012

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Status of Large-scale Analysis of Post-translational Modifications by Mass Spectrometry

Molecular & cellular proteomics, 2013-12, Vol.12 (12), p.3444-3452

2013

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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

Nature biotechnology, 2008-12, Vol.26 (12), p.1367-1372

2008

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A Primer on Concepts and Applications of Proteomics in Neuroscience

Neuron (Cambridge, Mass.), 2017-11, Vol.96 (3), p.558-571

2017

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An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics

Nature communications, 2019-02, Vol.10 (1), p.963-963, Article 963

2019

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Revisiting biomarker discovery by plasma proteomics

Molecular systems biology, 2017-09, Vol.13 (9), p.942-n/a

2017

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The Perseus computational platform for comprehensive analysis of (prote)omics data

Nature methods, 2016-09, Vol.13 (9), p.731

2016

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Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells

Nature methods, 2014-03, Vol.11 (3), p.319

2014

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More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC−MS/MS

Journal of proteome research, 2011-04, Vol.10 (4), p.1785-1793

2011

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Quantitative Analysis of the Intra- and Inter-Individual Variability of the Normal Urinary Proteome

Journal of proteome research, 2011-02, Vol.10 (2), p.637-645

2011

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Copy Number Analysis of the Murine Platelet Proteome Spanning the Complete Abundance Range

Molecular & cellular proteomics, 2014-12, Vol.13 (12), p.3435-3445

2014

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Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins

Molecular & cellular proteomics, 2012-03, Vol.11 (3), p.M111.014050-M111.014050, Article M111.014050

2012

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Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

Nature protocols, 2007-08, Vol.2 (8), p.1896-1906

2007

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Phosphorylation Is a Central Mechanism for Circadian Control of Metabolism and Physiology

Cell metabolism, 2017-01, Vol.25 (1), p.118-127

2017

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High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics

Nature biotechnology, 2015-09, Vol.33 (9), p.990-995

2015

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Proteomics to study DNA-bound and chromatin-associated gene regulatory complexes

Human molecular genetics, 2016-10, Vol.25 (R2), p.R106-R114

2016

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Protein Phosphorylation: A Major Switch Mechanism for Metabolic Regulation

Trends in endocrinology and metabolism, 2015-12, Vol.26 (12), p.676-687

2015

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Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

Molecular & cellular proteomics, 2014-09, Vol.13 (9), p.2513-2526

2014

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Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation[S]

Molecular & cellular proteomics, 2015-03, Vol.14 (3), p.658-673

2015

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Mass spectrometry–based proteomics in cell biology

The Journal of cell biology, 2010-08, Vol.190 (4), p.491-500

2010

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BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes

Nature methods, 2018-06, Vol.15 (6), p.440

2018

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Quantitative shotgun proteomics: considerations for a high-quality workflow in immunology

Nature immunology, 2014-02, Vol.15 (2), p.112

2014

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Functional and quantitative proteomics using SILAC

The ever expanding scope of electrospray mass spectrometry-a 30 year journey

Mass-spectrometric exploration of proteome structure and function

1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data

Status of Large-scale Analysis of Post-translational Modifications by Mass Spectrometry

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

A Primer on Concepts and Applications of Proteomics in Neuroscience

An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics

Revisiting biomarker discovery by plasma proteomics

The Perseus computational platform for comprehensive analysis of (prote)omics data

Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells

More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC−MS/MS

Quantitative Analysis of the Intra- and Inter-Individual Variability of the Normal Urinary Proteome

Copy Number Analysis of the Murine Platelet Proteome Spanning the Complete Abundance Range

Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

Phosphorylation Is a Central Mechanism for Circadian Control of Metabolism and Physiology

High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics

Proteomics to study DNA-bound and chromatin-associated gene regulatory complexes

Protein Phosphorylation: A Major Switch Mechanism for Metabolic Regulation

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation[S]

Mass spectrometry–based proteomics in cell biology

BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes

Quantitative shotgun proteomics: considerations for a high-quality workflow in immunology

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