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leeHom: adaptor trimming and merging for Illumina sequencing reads

Nucleic acids research, 2014-10, Vol.42 (18), p.e141

2014

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Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA

Genome Biology, 2015-10, Vol.16 (1), p.224-224, Article 224

2015

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deML: robust demultiplexing of Illumina sequences using a likelihood-based approach

Bioinformatics, 2015-03, Vol.31 (5), p.770-772

2015

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gargammel: a sequence simulator for ancient DNA

Bioinformatics (Oxford, England), 2017-02, Vol.33 (4), p.577-579

2017

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Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans

PLoS genetics, 2016-04, Vol.12 (4), p.e1005972-e1005972

2016

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Nuclear and mitochondrial DNA sequences from two Denisovan individuals

Proceedings of the National Academy of Sciences - PNAS, 2015-12, Vol.112 (51), p.15696-15700

2015

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A diversity profile of the human skin microbiota

Genome Research, 2008-07, Vol.18 (7), p.1043-1050

2008

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HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph

PLoS computational biology, 2023-06, Vol.19 (6), p.e1011148-e1011148

2023

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Benchmarking freely available HLA typing algorithms across varying genes, coverages and typing resolutions

Frontiers in immunology, 2022-11, Vol.13, p.987655-987655

2022

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Ancient Clostridium DNA and variants of tetanus neurotoxins associated with human archaeological remains

Nature communications, 2023-09, Vol.14 (1), p.5475-5475, Article 5475

2023

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glactools: a command-line toolset for the management of genotype likelihoods and allele counts

Bioinformatics, 2018-04, Vol.34 (8), p.1398-1400

2018

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Correction: Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans

PLoS genetics, 2016-11, Vol.12 (11), p.e1006444-e1006444

2016

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euka: Robust tetrapodic and arthropodic taxa detection from modern and ancient environmental DNA using pangenomic reference graphs

Methods in ecology and evolution, 2023-11, Vol.14 (11), p.2717-2727

2023

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Benchmarking software tools for trimming adapters and merging next-generation sequencing data for ancient DNA

Frontiers in bioinformatics, 2023-12, Vol.3, p.1260486-1260486

2023

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Unsupervised detection of fragment length signatures of circulating tumor DNA using non-negative matrix factorization

eLife, 2022-07, Vol.11

2022

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DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays

Nature methods, 2006-07, Vol.3 (7), p.503-509

2006

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Identification of neural crest and glial enhancers at the mouse Sox10 locus through transgenesis in zebrafish

PLoS genetics, 2008-09, Vol.4 (9), p.e1000174-e1000174

2008

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Segtor: rapid annotation of genomic coordinates and single nucleotide variations using segment trees

PloS one, 2011-11, Vol.6 (11), p.e26715-e26715

2011

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Gpnmb is a melanoblast‐expressed, MITF‐dependent gene

Pigment cell and melanoma research, 2009-02, Vol.22 (1), p.99-110

2009

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Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples

Genetics (Austin), 2019-07, Vol.212 (3), p.587-614

2019

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The repertoire of family A-peptide GPCRs in archaic hominins

Peptides (New York, N.Y. : 1980), 2019-12, Vol.122, p.170154-170154, Article 170154

2019

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freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers

Bioinformatics, 2013-05, Vol.29 (9), p.1208-1209

2013

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Bioinformatic flowchart and database to investigate the origins and diversity of clan AA peptidases

Biology direct, 2009-01, Vol.4 (1), p.3-3

2009

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leeHom: adaptor trimming and merging for Illumina sequencing reads

Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA

deML: robust demultiplexing of Illumina sequences using a likelihood-based approach

gargammel: a sequence simulator for ancient DNA

Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans

Nuclear and mitochondrial DNA sequences from two Denisovan individuals

Pleistocene Mitochondrial Genomes Suggest a Single Major Dispersal of Non-Africans and a Late Glacial Population Turnover in Europe

A diversity profile of the human skin microbiota

HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph

Benchmarking freely available HLA typing algorithms across varying genes, coverages and typing resolutions

Ancient Clostridium DNA and variants of tetanus neurotoxins associated with human archaeological remains

glactools: a command-line toolset for the management of genotype likelihoods and allele counts

Correction: Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans

euka: Robust tetrapodic and arthropodic taxa detection from modern and ancient environmental DNA using pangenomic reference graphs

Benchmarking software tools for trimming adapters and merging next-generation sequencing data for ancient DNA

Unsupervised detection of fragment length signatures of circulating tumor DNA using non-negative matrix factorization

DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays

Predisposition to cancer caused by genetic and functional defects of mammalian Atad5

Identification of neural crest and glial enhancers at the mouse Sox10 locus through transgenesis in zebrafish

Segtor: rapid annotation of genomic coordinates and single nucleotide variations using segment trees

Gpnmb is a melanoblast‐expressed, MITF‐dependent gene

Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples

The repertoire of family A-peptide GPCRs in archaic hominins

freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers

Bioinformatic flowchart and database to investigate the origins and diversity of clan AA peptidases

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