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Acquisition of the L452R Mutation in the ACE2-Binding Interface of Spike Protein Triggers Recent Massive Expansion of SARS-CoV-2 Variants

Journal of clinical microbiology, 2021-10, Vol.59 (11), p.e0092121-e0092121

2021

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Direct Whole-Genome Sequencing of Sputum Accurately Identifies Drug-Resistant Mycobacterium tuberculosis Faster than MGIT Culture Sequencing

Journal of clinical microbiology, 2018-08, Vol.56 (8)

2018

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Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples

Journal of clinical microbiology, 2019-12, Vol.58 (1)

2019

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Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates

Journal of clinical microbiology, 2017-12, Vol.55 (12), p.3530-3543

2017

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Persistent Transmission of Shigellosis in England Is Associated with a Recently Emerged Multidrug-Resistant Strain of Shigella sonnei

Journal of clinical microbiology, 2020-03, Vol.58 (4)

2020

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Species Identification and Antibiotic Resistance Prediction by Analysis of Whole-Genome Sequence Data by Use of ARESdb: an Analysis of Isolates from the Unyvero Lower Respiratory Tract Infection Trial

Journal of clinical microbiology, 2020-06, Vol.58 (7)

2020

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Real-Time Nanopore Q20+ Sequencing Enables Extremely Fast and Accurate Core Genome MLST Typing and Democratizes Access to High-Resolution Bacterial Pathogen Surveillance

Journal of clinical microbiology, 2023-04, Vol.61 (4), p.e0163122

2023

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Assessment of SARS-CoV-2 Genome Sequencing: Quality Criteria and Low-Frequency Variants

Journal of clinical microbiology, 2021-09, Vol.59 (10), p.e0094421-e0094421

2021

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Genomic Analysis of a Hospital-Associated Outbreak of Mycobacterium abscessus: Implications on Transmission

Journal of clinical microbiology, 2022-01, Vol.60 (1), p.e0154721

2022

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Genomic Investigation Reveals Contaminated Detergent as the Source of an Extended-Spectrum-β-Lactamase-Producing Klebsiella michiganensis Outbreak in a Neonatal Unit

Journal of clinical microbiology, 2020-04, Vol.58 (5)

2020

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hicap: In Silico Serotyping of the Haemophilus influenzae Capsule Locus

Journal of clinical microbiology, 2019-06, Vol.57 (6)

2019

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Evaluation of a point-of-care multiplex immunochromatographic assay for the diagnosis of typhoid: results from a retrospective diagnostic accuracy study

Journal of clinical microbiology, 2024-10, Vol.62 (10)

2024

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Nationwide upsurge in invasive disease in the context of longitudinal surveillance of carriage and invasive Streptococcus pyogenes 2009–2023, the Netherlands: a molecular epidemiological study

Journal of clinical microbiology, 2024-10, Vol.62 (10)

2024

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Machine-Learning Model for Prediction of Cefepime Susceptibility in Escherichia coli from Whole-Genome Sequencing Data

Journal of clinical microbiology, 2023-03, Vol.61 (3), p.e0143122-e0143122

2023

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Validation of the VirCapSeq-VERT system for differential diagnosis, detection, and surveillance of viral infections

Journal of clinical microbiology, 2024-01, Vol.62 (1), p.e0061223

2024

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Development and implementation of a core genome multilocus sequence typing scheme for Yersinia enterocolitica: a tool for surveillance and outbreak detection

Journal of clinical microbiology, 2024-08, Vol.62 (8), p.e0004024

2024

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Broad-range amplification and sequencing of the rpoB gene: a novel assay for bacterial identification in clinical microbiology

Journal of clinical microbiology, 2024-07, Vol.62 (7), p.e0026624

2024

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Genomic evolution of ST228 SCCmec-I MRSA 10 years after a major nosocomial outbreak

Journal of clinical microbiology, 2024-07, Vol.62 (7), p.e0020324

2024

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Construction of the ETECFinder database for the characterization of enterotoxigenic Escherichia coli (ETEC) and revision of the VirulenceFinder web tool at the CGE website

Journal of clinical microbiology, 2024-06, Vol.62 (6), p.e0057023

2024

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Population Genomic Molecular Epidemiological Study of Macrolide-Resistant Streptococcus pyogenes in Iceland, 1995 to 2016: Identification of a Large Clonal Population with a pbp2x Mutation Conferring Reduced In Vitro β-Lactam Susceptibility

Journal of clinical microbiology, 2020-08, Vol.58 (9)

2020

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A core-genome multilocus sequence typing scheme for the detection of genetically related Streptococcus pyogenes clusters

Journal of clinical microbiology, 2023-11, Vol.61 (11), p.e0055823-e0055823

2023

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Utilizing cost-effective portable equipment to enhance COVID-19 variant tracking both on-site and at a large scale

Journal of clinical microbiology, 2024-04, Vol.62 (4), p.e0155823

2024

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Serratia marcescens Outbreak in a Neonatal Intensive Care Unit: New Insights from Next-Generation Sequencing Applications

Journal of clinical microbiology, 2018-09, Vol.56 (9), p.JCM.00235-18

2018

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Whole-Genome Subtyping Reveals Population Structure and Host Adaptation of Salmonella Typhimurium from Wild Birds

Journal of clinical microbiology, 2023-06, Vol.61 (6), p.e0184722-e0184722

2023

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Helicobacter pylori Infections in the Bronx, New York: Surveying Antibiotic Susceptibility and Strain Lineage by Whole-Genome Sequencing

Journal of clinical microbiology, 2020-02, Vol.58 (3)

2020

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Acquisition of the L452R Mutation in the ACE2-Binding Interface of Spike Protein Triggers Recent Massive Expansion of SARS-CoV-2 Variants

Direct Whole-Genome Sequencing of Sputum Accurately Identifies Drug-Resistant Mycobacterium tuberculosis Faster than MGIT Culture Sequencing

Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples

Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates

Persistent Transmission of Shigellosis in England Is Associated with a Recently Emerged Multidrug-Resistant Strain of Shigella sonnei

Species Identification and Antibiotic Resistance Prediction by Analysis of Whole-Genome Sequence Data by Use of ARESdb: an Analysis of Isolates from the Unyvero Lower Respiratory Tract Infection Trial

Real-Time Nanopore Q20+ Sequencing Enables Extremely Fast and Accurate Core Genome MLST Typing and Democratizes Access to High-Resolution Bacterial Pathogen Surveillance

Assessment of SARS-CoV-2 Genome Sequencing: Quality Criteria and Low-Frequency Variants

Genomic Analysis of a Hospital-Associated Outbreak of Mycobacterium abscessus: Implications on Transmission

Genomic Investigation Reveals Contaminated Detergent as the Source of an Extended-Spectrum-β-Lactamase-Producing Klebsiella michiganensis Outbreak in a Neonatal Unit

hicap: In Silico Serotyping of the Haemophilus influenzae Capsule Locus

Evaluation of a point-of-care multiplex immunochromatographic assay for the diagnosis of typhoid: results from a retrospective diagnostic accuracy study

Nationwide upsurge in invasive disease in the context of longitudinal surveillance of carriage and invasive Streptococcus pyogenes 2009–2023, the Netherlands: a molecular epidemiological study

Machine-Learning Model for Prediction of Cefepime Susceptibility in Escherichia coli from Whole-Genome Sequencing Data

Validation of the VirCapSeq-VERT system for differential diagnosis, detection, and surveillance of viral infections

Development and implementation of a core genome multilocus sequence typing scheme for Yersinia enterocolitica: a tool for surveillance and outbreak detection

Broad-range amplification and sequencing of the rpoB gene: a novel assay for bacterial identification in clinical microbiology

Genomic evolution of ST228 SCCmec-I MRSA 10 years after a major nosocomial outbreak

Construction of the ETECFinder database for the characterization of enterotoxigenic Escherichia coli (ETEC) and revision of the VirulenceFinder web tool at the CGE website

Population Genomic Molecular Epidemiological Study of Macrolide-Resistant Streptococcus pyogenes in Iceland, 1995 to 2016: Identification of a Large Clonal Population with a pbp2x Mutation Conferring Reduced In Vitro β-Lactam Susceptibility

A core-genome multilocus sequence typing scheme for the detection of genetically related Streptococcus pyogenes clusters

Utilizing cost-effective portable equipment to enhance COVID-19 variant tracking both on-site and at a large scale

Serratia marcescens Outbreak in a Neonatal Intensive Care Unit: New Insights from Next-Generation Sequencing Applications

Whole-Genome Subtyping Reveals Population Structure and Host Adaptation of Salmonella Typhimurium from Wild Birds

Helicobacter pylori Infections in the Bronx, New York: Surveying Antibiotic Susceptibility and Strain Lineage by Whole-Genome Sequencing

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