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Pleural infection: Contemporary Microbiology Completing the Picture

Clinical infectious diseases, 2024-03

2024

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Investigating the human jejunal microbiota

Scientific reports, 2022-01, Vol.12 (1), p.1682-1682, Article 1682

2022

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High Prevalence of Faecal Carriage of ESBL-Producing Enterobacteriaceae among Children in Dar es Salaam, Tanzania

PloS one, 2016-12, Vol.11 (12), p.e0168024-e0168024

2016

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Species Level Description of the Human Ileal Bacterial Microbiota

Scientific reports, 2018-03, Vol.8 (1), p.4736-9, Article 4736

2018

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The cultivable microbiota of the human distal ileum

Clinical microbiology and infection, 2021-06, Vol.27 (6), p.912.e7-912.e13

2021

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Managing Contamination and Diverse Bacterial Loads in 16S rRNA Deep Sequencing of Clinical Samples: Implications of the Law of Small Numbers

mBio, 2021-06, Vol.12 (3), p.e0059821-e0059821

2021

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Characterization of abscesses from liver, pancreas and kidney using deep sequencing of the 16S rRNA gene

Diagnostic microbiology and infectious disease, 2021-03, Vol.99 (3), p.115277-115277, Article 115277

2021

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Massive parallel sequencing provides new perspectives on bacterial brain abscesses

Journal of clinical microbiology, 2014-06, Vol.52 (6), p.1990-1997

2014

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Comprehensive Analysis of Prevalence, Epidemiologic Characteristics, and Clinical Characteristics of Monoinfection and Coinfection in Diarrheal Diseases in Children in Tanzania

American journal of epidemiology, 2017-11, Vol.186 (9), p.1074-1083

2017

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Bacteria and fungi in acute cholecystitis. A prospective study comparing next generation sequencing to culture

The Journal of infection, 2020-01, Vol.80 (1), p.16-23

2020

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Pleural Empyema Caused by Streptococcus intermedius and Fusobacterium nucleatum: A Distinct Entity of Pleural Infections

Clinical infectious diseases, 2023-11, Vol.77 (10), p.1361-1371

2023

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Dual Priming Oligonucleotides for Broad-Range Amplification of the Bacterial 16S rRNA Gene Directly from Human Clinical Specimens

Journal of Clinical Microbiology, 2012-04, Vol.50 (4), p.1289-1294

2012

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The changing spectrum of microbial aetiology of respiratory tract infections in hospitalized patients before and during the COVID-19 pandemic

BMC infectious diseases, 2022-09, Vol.22 (1), p.1-763, Article 763

2022

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Diagnostic utility of oropharyngeal swabs as an alternative to lower respiratory tract samples for PCR-based syndromic testing in patients with community-acquired pneumonia

Journal of clinical microbiology, 2023-09, Vol.61 (9), p.e0050523-e0050523

2023

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Analysis of Mixed Sequencing Chromatograms and Its Application in Direct 16S rRNA Gene Sequencing of Polymicrobial Samples

Journal of Clinical Microbiology, 2008-11, Vol.46 (11), p.3766-3771

2008

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HPV Genotyping of Modified General Primer-Amplicons Is More Analytically Sensitive and Specific by Sequencing than by Hybridization

PloS one, 2017-01, Vol.12 (1), p.e0169074

2017

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Repeated bronchoscopy in health and obstructive lung disease: is the airway microbiome stable?

BMC pulmonary medicine, 2021-11, Vol.21 (1), p.342-342, Article 342

2021

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Direct 16S rRNA Gene Sequencing from Clinical Specimens, with Special Focus on Polybacterial Samples and Interpretation of Mixed DNA Chromatograms

Journal of Clinical Microbiology, 2009-11, Vol.47 (11), p.3562-3568

2009

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Escherichia marmotae-a Human Pathogen Easily Misidentified as Escherichia coli

Microbiology spectrum, 2022-04, Vol.10 (2), p.e0203521-e0203521

2022

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Horizontal Plasmid Transfer among Klebsiella pneumoniae Isolates Is the Key Factor for Dissemination of Extended-Spectrum β-Lactamases among Children in Tanzania

mSphere, 2020-07, Vol.5 (4)

2020

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The diagnostic utility of microscopic quality assessment of sputum samples in the era of rapid syndromic PCR testing

Microbiology spectrum, 2023-10, Vol.11 (5), p.e0300223-e0300223

2023

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Genetic antimicrobial susceptibility testing in Gram-negative sepsis - impact on time to results in a routine laboratory

APMIS : acta pathologica, microbiologica et immunologica Scandinavica, 2016-07, Vol.124 (7), p.603-610

2016

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Eikenella exigua sp. nov., isolated from brain abscess and blood

International journal of systematic and evolutionary microbiology, 2020-03, Vol.70 (3), p.1478-1488

2020

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Comparison of rapid molecular testing methods for detecting respiratory viruses in emergency care: a prospective study

Infectious diseases (London, England), 2022-04, Vol.54 (4), p.247-254

2022

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Characterization of polybacterial clinical samples using a set of group-specific broad-range primers targeting the 16S rRNA gene followed by DNA sequencing and RipSeq analysis

Journal of medical microbiology, 2011-07, Vol.60 (7), p.927-936

2011

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Pleural infection: Contemporary Microbiology Completing the Picture

Investigating the human jejunal microbiota

High Prevalence of Faecal Carriage of ESBL-Producing Enterobacteriaceae among Children in Dar es Salaam, Tanzania

Species Level Description of the Human Ileal Bacterial Microbiota

The cultivable microbiota of the human distal ileum

Managing Contamination and Diverse Bacterial Loads in 16S rRNA Deep Sequencing of Clinical Samples: Implications of the Law of Small Numbers

Characterization of abscesses from liver, pancreas and kidney using deep sequencing of the 16S rRNA gene

Massive parallel sequencing provides new perspectives on bacterial brain abscesses

Comprehensive Analysis of Prevalence, Epidemiologic Characteristics, and Clinical Characteristics of Monoinfection and Coinfection in Diarrheal Diseases in Children in Tanzania

Bacteria and fungi in acute cholecystitis. A prospective study comparing next generation sequencing to culture

Pleural Empyema Caused by Streptococcus intermedius and Fusobacterium nucleatum: A Distinct Entity of Pleural Infections

Dual Priming Oligonucleotides for Broad-Range Amplification of the Bacterial 16S rRNA Gene Directly from Human Clinical Specimens

The changing spectrum of microbial aetiology of respiratory tract infections in hospitalized patients before and during the COVID-19 pandemic

Diagnostic utility of oropharyngeal swabs as an alternative to lower respiratory tract samples for PCR-based syndromic testing in patients with community-acquired pneumonia

Analysis of Mixed Sequencing Chromatograms and Its Application in Direct 16S rRNA Gene Sequencing of Polymicrobial Samples

HPV Genotyping of Modified General Primer-Amplicons Is More Analytically Sensitive and Specific by Sequencing than by Hybridization

Repeated bronchoscopy in health and obstructive lung disease: is the airway microbiome stable?

Direct 16S rRNA Gene Sequencing from Clinical Specimens, with Special Focus on Polybacterial Samples and Interpretation of Mixed DNA Chromatograms

Escherichia marmotae-a Human Pathogen Easily Misidentified as Escherichia coli

Horizontal Plasmid Transfer among Klebsiella pneumoniae Isolates Is the Key Factor for Dissemination of Extended-Spectrum β-Lactamases among Children in Tanzania

The diagnostic utility of microscopic quality assessment of sputum samples in the era of rapid syndromic PCR testing

Genetic antimicrobial susceptibility testing in Gram-negative sepsis - impact on time to results in a routine laboratory

Eikenella exigua sp. nov., isolated from brain abscess and blood

Comparison of rapid molecular testing methods for detecting respiratory viruses in emergency care: a prospective study

Characterization of polybacterial clinical samples using a set of group-specific broad-range primers targeting the 16S rRNA gene followed by DNA sequencing and RipSeq analysis

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