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MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets

Nature methods, 2020-10, Vol.17 (10), p.981-984

2020

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Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial

Molecular systems biology, 2021-08, Vol.17 (8), p.e10240-n/a

2021

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Decoding Functional High-Density Lipoprotein Particle Surfaceome Interactions

International journal of molecular sciences, 2022-08, Vol.23 (16), p.9506

2022

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HATRIC-based identification of receptors for orphan ligands

Nature communications, 2018-04, Vol.9 (1), p.1519-8, Article 1519

2018

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An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics

Genome research, 2017-12, Vol.27 (12), p.2083-2095

2017

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Standardization and harmonization of distributed multi-center proteotype analysis supporting precision medicine studies

Nature communications, 2020-10, Vol.11 (1), p.5248-5248, Article 5248

2020

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Mapping specificity, cleavage entropy, allosteric changes and substrates of blood proteases in a high-throughput screen

Nature communications, 2021-03, Vol.12 (1), p.1693-1693, Article 1693

2021

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Protection of armadillo/β-Catenin by armless, a novel positive regulator of wingless signaling

PLoS biology, 2014-11, Vol.12 (11), p.e1001988

2014

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Proteogenetic drug response profiling elucidates targetable vulnerabilities of myelofibrosis

Nature communications, 2023-10, Vol.14 (1), p.6414-6414, Article 6414

2023

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Spatially confined folding of chromatin in the interphase nucleus

Proceedings of the National Academy of Sciences - PNAS, 2009-03, Vol.106 (10), p.3812-3817

2009

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Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster

PLoS biology, 2009-11, Vol.7 (11), p.e1000236-e1000236

2009

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The hemolymph proteome of fed and starved Drosophila larvae

PloS one, 2013-06, Vol.8 (6), p.e67208-e67208

2013

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The Three-Dimensional Structure of Human Interphase Chromosomes Is Related to the Transcriptome Map

Molecular and Cellular Biology, 2007-06, Vol.27 (12), p.4475-4487

2007

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Domain-wide regulation of gene expression in the human genome

Genome Research, 2007-09, Vol.17 (9), p.1286-1295

2007

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Improved prediction of peptide detectability for targeted proteomics using a rank-based algorithm and organism-specific data

Journal of proteomics, 2014-08, Vol.108, p.269-283

2014

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Quantification by Liquid Chromatography Tandem Mass Spectrometry of Mycophenolic Acid and Its Phenol and Acyl Glucuronide Metabolites

Clinical chemistry (Baltimore, Md.), 2006-10, Vol.52 (10), p.1962-1964

2006

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Chromatin loops are selectively anchored using scaffold/matrix-attachment regions

Journal of cell science, 2004-03, Vol.117 (Pt 7), p.999-1008

2004

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Performance of Genomic Bordering Elements at Predefined Genomic Loci

Molecular and Cellular Biology, 2005-03, Vol.25 (6), p.2260-2272

2005

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Mapping the dynamic high-density lipoprotein synapse

Atherosclerosis, 2023-09, Vol.380, p.117200-117200, Article 117200

2023

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Multiomics Profiling Reveals Higher RNA Isoform Diversity and Potential Oncospecific Protein Isoform Targets in HSPCs of MDS and MDS/MPN Patients

Blood, 2023-11, Vol.142 (Supplement 1), p.4592-4592

2023

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Interactive effects of CO2 and trace metals on the proteasome activity and cellular stress response of marine bivalves Crassostrea virginica and Mercenaria mercenaria

Aquatic toxicology, 2014-04, Vol.149, p.65-82

2014

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Ariadne’s Thread: A Robust Software Solution Leading to Automated Absolute and Relative Quantification of SRM Data

Journal of proteome research, 2015-09, Vol.14 (9), p.3779-3792

2015

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Single and combined effects of the “Deadly trio” hypoxia, hypercapnia and warming on the cellular metabolism of the great scallop Pecten maximus

Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, 2020-06, Vol.243-244, p.110438, Article 110438

2020

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Thermal performance of the European flat oyster, Ostrea edulis (Linnaeus, 1758)—explaining ecological findings under climate change

Marine biology, 2020-01, Vol.167 (2), Article 17

2020

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MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets

Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial

Decoding Functional High-Density Lipoprotein Particle Surfaceome Interactions

HATRIC-based identification of receptors for orphan ligands

An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics

Standardization and harmonization of distributed multi-center proteotype analysis supporting precision medicine studies

Mapping specificity, cleavage entropy, allosteric changes and substrates of blood proteases in a high-throughput screen

Protection of armadillo/β-Catenin by armless, a novel positive regulator of wingless signaling

Proteogenetic drug response profiling elucidates targetable vulnerabilities of myelofibrosis

Spatially confined folding of chromatin in the interphase nucleus

Structure-function relationships of HDL in diabetes and coronary heart disease

Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster

The hemolymph proteome of fed and starved Drosophila larvae

The Three-Dimensional Structure of Human Interphase Chromosomes Is Related to the Transcriptome Map

Domain-wide regulation of gene expression in the human genome

Improved prediction of peptide detectability for targeted proteomics using a rank-based algorithm and organism-specific data

Quantification by Liquid Chromatography Tandem Mass Spectrometry of Mycophenolic Acid and Its Phenol and Acyl Glucuronide Metabolites

Chromatin loops are selectively anchored using scaffold/matrix-attachment regions

Performance of Genomic Bordering Elements at Predefined Genomic Loci

Mapping the dynamic high-density lipoprotein synapse

Multiomics Profiling Reveals Higher RNA Isoform Diversity and Potential Oncospecific Protein Isoform Targets in HSPCs of MDS and MDS/MPN Patients

Interactive effects of CO2 and trace metals on the proteasome activity and cellular stress response of marine bivalves Crassostrea virginica and Mercenaria mercenaria

Ariadne’s Thread: A Robust Software Solution Leading to Automated Absolute and Relative Quantification of SRM Data

Single and combined effects of the “Deadly trio” hypoxia, hypercapnia and warming on the cellular metabolism of the great scallop Pecten maximus

Thermal performance of the European flat oyster, Ostrea edulis (Linnaeus, 1758)—explaining ecological findings under climate change

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