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Mass-spectrometric exploration of proteome structure and function

Nature (London), 2016-09, Vol.537 (7620), p.347-355

2016

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Proteomic and interactomic insights into the molecular basis of cell functional diversity

Nature reviews. Molecular cell biology, 2020-06, Vol.21 (6), p.327-340

2020

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Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions

Nature methods, 2012-06, Vol.9 (6), p.555-566

2012

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On the Dependency of Cellular Protein Levels on mRNA Abundance

Cell, 2016-04, Vol.165 (3), p.535-550

2016

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Lysine-specific chemical cross-linking of protein complexes and identification of cross-linking sites using LC-MS/MS and the xQuest/xProphet software pipeline

Nature protocols, 2014-01, Vol.9 (1), p.120-137

2014

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Options and considerations when selecting a quantitative proteomics strategy

Nature biotechnology, 2010-07, Vol.28 (7), p.710-721

2010

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Crosslinking and Mass Spectrometry: An Integrated Technology to Understand the Structure and Function of Molecular Machines

Trends in biochemical sciences (Amsterdam. Regular ed.), 2016-01, Vol.41 (1), p.20-32

2016

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Applying mass spectrometry-based proteomics to genetics, genomics and network biology

Nature reviews. Genetics, 2009-09, Vol.10 (9), p.617-627

2009

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Mass Spectrometry and Protein Analysis

Science (American Association for the Advancement of Science), 2006-04, Vol.312 (5771), p.212-217

2006

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diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition

Nature methods, 2020-12, Vol.17 (12), p.1229-1236

2020

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Selected reaction monitoring for quantitative proteomics: a tutorial

Molecular systems biology, 2008, Vol.4 (1), p.222-n/a

2008

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JARID2 and AEBP2 regulate PRC2 in the presence of H2AK119ub1 and other histone modifications

Science (American Association for the Advancement of Science), 2021-01, Vol.371 (6527)

2021

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Architecture and conformational switch mechanism of the ryanodine receptor

Nature (London), 2015-01, Vol.517 (7532), p.39-43

2015

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Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells

Cell, 2012-10, Vol.151 (3), p.671-683

2012

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ChromID identifies the protein interactome at chromatin marks

Nature biotechnology, 2020-06, Vol.38 (6), p.728-736

2020

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Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

Molecular & cellular proteomics, 2012-06, Vol.11 (6), p.O111.016717-O111.016717, Article O111.016717

2012

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Systematic detection of functional proteoform groups from bottom-up proteomic datasets

Nature communications, 2021-06, Vol.12 (1), p.3810-3810, Article 3810

2021

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Structures of human PRC2 with its cofactors AEBP2 and JARID2

Science (American Association for the Advancement of Science), 2018-02, Vol.359 (6378), p.940-944

2018

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Structural insights into the assembly and polyA signal recognition mechanism of the human CPSF complex

eLife, 2017-12, Vol.6

2017

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NAD⁺ repletion improves mitochondrial and stem cell function and enhances life span in mice

Science (American Association for the Advancement of Science), 2016-06, Vol.352 (6292), p.1436-1443

2016

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Mass spectrometry supported determination of protein complex structure

Current opinion in structural biology, 2013-04, Vol.23 (2), p.252-260

2013

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Beyond ATM: The protein kinase landscape of the DNA damage response

FEBS letters, 2011-06, Vol.585 (11), p.1625-1639

2011

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Using data-independent, high-resolution mass spectrometry in protein biomarker research: Perspectives and clinical applications

Proteomics. Clinical applications, 2015-04, Vol.9 (3-4), p.307-321

2015

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Dual Specificity Kinase DYRK3 Couples Stress Granule Condensation/Dissolution to mTORC1 Signaling

Cell, 2013-02, Vol.152 (4), p.791-805

2013

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Structural basis of AAUAAA polyadenylation signal recognition by the human CPSF complex

Nature structural & molecular biology, 2018-02, Vol.25 (2), p.135-138

2018

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Mass-spectrometric exploration of proteome structure and function

Proteomic and interactomic insights into the molecular basis of cell functional diversity

Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions

On the Dependency of Cellular Protein Levels on mRNA Abundance

Lysine-specific chemical cross-linking of protein complexes and identification of cross-linking sites using LC-MS/MS and the xQuest/xProphet software pipeline

Options and considerations when selecting a quantitative proteomics strategy

Crosslinking and Mass Spectrometry: An Integrated Technology to Understand the Structure and Function of Molecular Machines

Applying mass spectrometry-based proteomics to genetics, genomics and network biology

Mass Spectrometry and Protein Analysis

diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition

Selected reaction monitoring for quantitative proteomics: a tutorial

JARID2 and AEBP2 regulate PRC2 in the presence of H2AK119ub1 and other histone modifications

Architecture and conformational switch mechanism of the ryanodine receptor

Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells

ChromID identifies the protein interactome at chromatin marks

Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

Systematic detection of functional proteoform groups from bottom-up proteomic datasets

Structures of human PRC2 with its cofactors AEBP2 and JARID2

Structural insights into the assembly and polyA signal recognition mechanism of the human CPSF complex

NAD⁺ repletion improves mitochondrial and stem cell function and enhances life span in mice

Mass spectrometry supported determination of protein complex structure

Beyond ATM: The protein kinase landscape of the DNA damage response

Using data-independent, high-resolution mass spectrometry in protein biomarker research: Perspectives and clinical applications

Dual Specificity Kinase DYRK3 Couples Stress Granule Condensation/Dissolution to mTORC1 Signaling

Structural basis of AAUAAA polyadenylation signal recognition by the human CPSF complex

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