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Evaluation of algorithm performance in ChIP-seq peak detection

PloS one, 2010-07, Vol.5 (7), p.e11471-e11471

2010

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An integrated pipeline for de novo assembly of microbial genomes

PloS one, 2012-09, Vol.7 (9), p.e42304-e42304

2012

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Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response

PLoS genetics, 2014-11, Vol.10 (11), p.e1004784-e1004784

2014

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Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant

PloS one, 2015-05, Vol.10 (5), p.e0127630-e0127630

2015

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Thermodynamically inspired classifier for molecular phenotypes of health and disease

Proceedings of the National Academy of Sciences - PNAS, 2013-11, Vol.110 (48), p.19181-19182

Facciotti, Marc T.

2013

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Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh

Environmental microbiology, 2014-11, Vol.16 (11), p.3398-3415

2014

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IRF-1 and miRNA126 Modulate VCAM-1 Expression in Response to a High-Fat Meal

Circulation research, 2012-09, Vol.111 (8), p.1054-1064

2012

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A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell

Cell, 2007-12, Vol.131 (7), p.1354-1365

2007

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A Large and Phylogenetically Diverse Class of Type 1 Opsins Lacking a Canonical Retinal Binding Site

PloS one, 2016-06, Vol.11 (6), p.e0156543-e0156543

2016

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Schiff base switch II precedes the retinal thermal isomerization in the photocycle of bacteriorhodopsin

PloS one, 2013-07, Vol.8 (7), p.e69882-e69882

2013

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Deprotonation of D96 in Bacteriorhodopsin Opens the Proton Uptake Pathway

Structure (London), 2013-02, Vol.21 (2), p.290-297

2013

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Role of Squalene in the Organization of Monolayers Derived from Lipid Extracts of Halobacterium salinarum

Langmuir, 2013-06, Vol.29 (25), p.7922-7930

2013

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Combining Microbial Culturing With Mathematical Modeling in an Introductory Course-Based Undergraduate Research Experience

Frontiers in microbiology, 2020-11, Vol.11, p.581903-581903

2020

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Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea

Genome research, 2004-11, Vol.14 (11), p.2221-2234

2004

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Gene Gangs of the Chloroviruses: Conserved Clusters of Collinear Monocistronic Genes

Viruses, 2018-10, Vol.10 (10), p.576

2018

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The Exploration of Novel Regulatory Relationships Drives Haloarchaeal Operon-Like Structural Dynamics over Short Evolutionary Distances

Microorganisms (Basel), 2020-11, Vol.8 (12), p.1900

2020

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Prevalence of transcription promoters within archaeal operons and coding sequences

Molecular systems biology, 2009-06, Vol.5 (1), p.285-n/a

2009

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JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison

BMC bioinformatics, 2013-01, Vol.14 (1), p.18-18, Article 18

2013

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Conserved substitution patterns around nucleosome footprints in eukaryotes and Archaea derive from frequent nucleosome repositioning through evolution

PLoS computational biology, 2013-11, Vol.9 (11), p.e1003373-e1003373

2013

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A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs

BMC bioinformatics, 2012-11, Vol.13 (1), p.317-317, Article 317

2012

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Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux

PloS one, 2012-07, Vol.7 (7), p.e41389-e41389

2012

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General Transcription Factor Specified Global Gene Regulation in Archaea

Proceedings of the National Academy of Sciences - PNAS, 2007-03, Vol.104 (11), p.4630-4635

2007

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Model-based deconvolution of genome-wide DNA binding

Bioinformatics, 2008-02, Vol.24 (3), p.396-403

2008

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Global gene expression analysis of the Myxococcus xanthus developmental time course

Genomics (San Diego, Calif.), 2021-01, Vol.113 (1), p.120-134

2021

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Mauve Assembly Metrics

Bioinformatics, 2011-10, Vol.27 (19), p.2756-2757

2011

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Evaluation of algorithm performance in ChIP-seq peak detection

An integrated pipeline for de novo assembly of microbial genomes

Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response

Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant

Thermodynamically inspired classifier for molecular phenotypes of health and disease

Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh

IRF-1 and miRNA126 Modulate VCAM-1 Expression in Response to a High-Fat Meal

A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell

A Large and Phylogenetically Diverse Class of Type 1 Opsins Lacking a Canonical Retinal Binding Site

Schiff base switch II precedes the retinal thermal isomerization in the photocycle of bacteriorhodopsin

Deprotonation of D96 in Bacteriorhodopsin Opens the Proton Uptake Pathway

Role of Squalene in the Organization of Monolayers Derived from Lipid Extracts of Halobacterium salinarum

Combining Microbial Culturing With Mathematical Modeling in an Introductory Course-Based Undergraduate Research Experience

Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea

Gene Gangs of the Chloroviruses: Conserved Clusters of Collinear Monocistronic Genes

The Exploration of Novel Regulatory Relationships Drives Haloarchaeal Operon-Like Structural Dynamics over Short Evolutionary Distances

Prevalence of transcription promoters within archaeal operons and coding sequences

JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison

Conserved substitution patterns around nucleosome footprints in eukaryotes and Archaea derive from frequent nucleosome repositioning through evolution

A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs

Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux

General Transcription Factor Specified Global Gene Regulation in Archaea

Model-based deconvolution of genome-wide DNA binding

Global gene expression analysis of the Myxococcus xanthus developmental time course

Mauve Assembly Metrics

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