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RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

PLoS computational biology, 2018-10, Vol.14 (10), p.e1006541-e1006541

2018

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Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease

Nature communications, 2014-01, Vol.5 (1), p.3083-3083, Article 3083

2014

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Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes

PLoS computational biology, 2010-07, Vol.6 (7), p.e1000859-e1000859

2010

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ATAC-seq reveals alterations in open chromatin in pancreatic islets from subjects with type 2 diabetes

Scientific reports, 2019-05, Vol.9 (1), p.7785-7785, Article 7785

2019

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Integration of clinical data with a genome‐scale metabolic model of the human adipocyte

Molecular systems biology, 2013, Vol.9 (1), p.649-n/a

2013

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Genome-scale modeling enables metabolic engineering of Saccharomyces cerevisiae for succinic acid production

Journal of industrial microbiology & biotechnology, 2013-07, Vol.40 (7), p.735-747

2013

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Use of genome-scale metabolic models for understanding microbial physiology

FEBS letters, 2010-06, Vol.584 (12), p.2556-2564

2010

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Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials

BMC systems biology, 2012-04, Vol.6 (1), p.24-24, Article 24

2012

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Identification of anticancer drugs for hepatocellular carcinoma through personalized genome‐scale metabolic modeling

Molecular systems biology, 2014-03, Vol.10 (3), p.721-n/a

2014

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Author Correction: ATAC-seq reveals alterations in open chromatin in pancreatic islets from subjects with type 2 diabetes

Scientific reports, 2020-01, Vol.10 (1), p.1744-1744, Article 1744

2020

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The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum

PLoS computational biology, 2013-03, Vol.9 (3), p.e1002980-e1002980

2013

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Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT

PLoS computational biology, 2012-05, Vol.8 (5), p.e1002518-e1002518

2012

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Metabolic Needs and Capabilities of Toxoplasma gondii through Combined Computational and Experimental Analysis

PLoS computational biology, 2015-05, Vol.11 (5), p.e1004261

2015

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MEMOSys: Bioinformatics platform for genome-scale metabolic models

BMC systems biology, 2011-01, Vol.5 (21), p.20-20, Article 20

2011

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Archaeal community changes in Lateglacial lake sediments: Evidence from ancient DNA

Quaternary science reviews, 2018-02, Vol.181, p.19-29

2018

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BioMet Toolbox: genome-wide analysis of metabolism

Nucleic acids research, 2010-07, Vol.38 (Web Server issue), p.W144

2010

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APOL1 promotes endothelial cell activation beyond the glomerulus

iScience, 2023-06, Vol.26 (6), p.106830-106830, Article 106830

2023

Volltextzugriff (PDF)

Multi-omics and imaging mass cytometry characterization of human kidneys to identify pathways and phenotypes associated with impaired kidney function

Kidney international, 2024-07, Vol.106 (1), p.85-97

2024

Volltextzugriff (PDF)

Metabolic Needs and Capabilities of Toxoplasma gondii through Combined Computational and Experimental Analysis: e1004261

PLoS computational biology, 2015-05, Vol.11 (5)

2015

Volltextzugriff (PDF)

Sampling the Solution Space in Genome-Scale Metabolic Networks Reveals Transcriptional Regulation in Key Enzymes: e1000859

PLoS computational biology, 2010-07, Vol.6 (7)

2010

Volltextzugriff (PDF)

The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum: e1002980

PLoS computational biology, 2013-03, Vol.9 (3)

2013

Volltextzugriff (PDF)

APOL1 Promotes Endothelial Cell Activation Beyond the Glomerulus: FR-OR52

Journal of the American Society of Nephrology, 2022-11, Vol.33 (11S), p.32-32

2022

Volltextzugriff (PDF)

On Metabolic Networks and Multi-omics Integration

Ågren, Rasmus

2013

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Bioactivity and stability of endogenous fibrogenic factors in platelet-rich fibrin

Wound repair and regeneration, 2008-05, Vol.16 (3), p.356-363

2008

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Response of Dissolved Organic Carbon following Forest Harvesting in a Boreal Forest

Ambio, 2009-11, Vol.38 (7), p.381-386

2009

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RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease

Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes

ATAC-seq reveals alterations in open chromatin in pancreatic islets from subjects with type 2 diabetes

Integration of clinical data with a genome‐scale metabolic model of the human adipocyte

Genome-scale modeling enables metabolic engineering of Saccharomyces cerevisiae for succinic acid production

Use of genome-scale metabolic models for understanding microbial physiology

Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials

Identification of anticancer drugs for hepatocellular carcinoma through personalized genome‐scale metabolic modeling

Author Correction: ATAC-seq reveals alterations in open chromatin in pancreatic islets from subjects with type 2 diabetes

The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum

Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT

Metabolic Needs and Capabilities of Toxoplasma gondii through Combined Computational and Experimental Analysis

MEMOSys: Bioinformatics platform for genome-scale metabolic models

Archaeal community changes in Lateglacial lake sediments: Evidence from ancient DNA

BioMet Toolbox: genome-wide analysis of metabolism

APOL1 promotes endothelial cell activation beyond the glomerulus

Multi-omics and imaging mass cytometry characterization of human kidneys to identify pathways and phenotypes associated with impaired kidney function

Metabolic Needs and Capabilities of Toxoplasma gondii through Combined Computational and Experimental Analysis: e1004261

Sampling the Solution Space in Genome-Scale Metabolic Networks Reveals Transcriptional Regulation in Key Enzymes: e1000859

The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum: e1002980

APOL1 Promotes Endothelial Cell Activation Beyond the Glomerulus: FR-OR52

On Metabolic Networks and Multi-omics Integration

Bioactivity and stability of endogenous fibrogenic factors in platelet-rich fibrin

Response of Dissolved Organic Carbon following Forest Harvesting in a Boreal Forest

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