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Quantifying tumor-infiltrating immune cells from transcriptomics data

Cancer Immunology, Immunotherapy, 2018-07, Vol.67 (7), p.1031-1040

2018

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Next-generation computational tools for interrogating cancer immunity

Nature reviews. Genetics, 2019-12, Vol.20 (12), p.724-746

2019

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Neoantigens Generated by Individual Mutations and Their Role in Cancer Immunity and Immunotherapy

Frontiers in immunology, 2017-11, Vol.8, p.1679-1679

2017

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Mitochondrial DNA drives abscopal responses to radiation that are inhibited by autophagy

Nature immunology, 2020-10, Vol.21 (10), p.1160-1171

2020

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Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy

Genome Biology, 2015-03, Vol.16 (1), p.64-64, Article 64

2015

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Cardiopulmonary recovery after COVID-19: an observational prospective multicentre trial

The European respiratory journal, 2021-04, Vol.57 (4), p.2003481

2021

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Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution

Nature communications, 2018-01, Vol.9 (1), p.32-32, Article 32

2018

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Spatiotemporal Dynamics of Intratumoral Immune Cells Reveal the Immune Landscape in Human Cancer

Immunity (Cambridge, Mass.), 2013-10, Vol.39 (4), p.782-795

2013

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Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

Genome medicine, 2019-05, Vol.11 (1), p.34-34, Article 34

2019

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Histopathologic-Based Prognostic Factors of Colorectal Cancers Are Associated With the State of the Local Immune Reaction

Journal of clinical oncology, 2011-02, Vol.29 (6), p.610-618

2011

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ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

Bioinformatics, 2009-04, Vol.25 (8), p.1091-1093

2009

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Genesis: cluster analysis of microarray data

Bioinformatics, 2002-01, Vol.18 (1), p.207-208

2002

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In Situ Cytotoxic and Memory T Cells Predict Outcome in Patients With Early-Stage Colorectal Cancer

Journal of clinical oncology, 2009-12, Vol.27 (35), p.5944-5951

2009

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The coordinated action of the MVB pathway and autophagy ensures cell survival during starvation

eLife, 2015-04, Vol.4, p.e07736

2015

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Intratumoral HPV16-Specific T Cells Constitute a Type I-Oriented Tumor Microenvironment to Improve Survival in HPV16-Driven Oropharyngeal Cancer

Clinical cancer research, 2018-02, Vol.24 (3), p.634-647

2018

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Comprehensive characterization of the prostate tumor microenvironment identifies CXCR4/CXCL12 crosstalk as a novel antiangiogenic therapeutic target in prostate cancer

Molecular cancer, 2022-06, Vol.21 (1), p.1-132, Article 132

2022

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Gene expression profiling of human mesenchymal stem cells derived from bone marrow during expansion and osteoblast differentiation

BMC genomics, 2007-03, Vol.8 (1), p.70-70, Article 70

2007

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Type, Density, and Location of Immune Cells Within Human Colorectal Tumors Predict Clinical Outcome

Science (American Association for the Advancement of Science), 2006-09, Vol.313 (5795), p.1960-1964

2006

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Nuclear receptor NR2F6 inhibition potentiates responses to PD-L1/PD-1 cancer immune checkpoint blockade

Nature communications, 2018-04, Vol.9 (1), p.1538-13, Article 1538

2018

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miR-22 and miR-29a Are Members of the Androgen Receptor Cistrome Modulating LAMC1 and Mcl-1 in Prostate Cancer

Molecular endocrinology (Baltimore, Md.), 2015-07, Vol.29 (7), p.1037-1054

2015

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Epithelial X-Box Binding Protein 1 Coordinates Tumor Protein p53-Driven DNA Damage Responses and Suppression of Intestinal Carcinogenesis

Gastroenterology (New York, N.Y. 1943), 2022-01, Vol.162 (1), p.223-237.e11

2022

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Comprehensive Analysis of R-Spondin Fusions and RNF43 Mutations Implicate Novel Therapeutic Options in Colorectal Cancer

Clinical cancer research, 2022-05, Vol.28 (9), p.1863-1870

2022

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Coordination of Intratumoral Immune Reaction and Human Colorectal Cancer Recurrence

Cancer research (Chicago, Ill.), 2009-03, Vol.69 (6), p.2685-2693

2009

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Protocol for functional profiling of patient-derived organoids for precision oncology

STAR protocols, 2024-03, Vol.5 (1), p.102887-102887, Article 102887

2024

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Quantifying tumor-infiltrating immune cells from transcriptomics data

Next-generation computational tools for interrogating cancer immunity

Neoantigens Generated by Individual Mutations and Their Role in Cancer Immunity and Immunotherapy

Mitochondrial DNA drives abscopal responses to radiation that are inhibited by autophagy

Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy

Cardiopulmonary recovery after COVID-19: an observational prospective multicentre trial

Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution

Spatiotemporal Dynamics of Intratumoral Immune Cells Reveal the Immune Landscape in Human Cancer

Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

Histopathologic-Based Prognostic Factors of Colorectal Cancers Are Associated With the State of the Local Immune Reaction

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

Genesis: cluster analysis of microarray data

In Situ Cytotoxic and Memory T Cells Predict Outcome in Patients With Early-Stage Colorectal Cancer

The coordinated action of the MVB pathway and autophagy ensures cell survival during starvation

Intratumoral HPV16-Specific T Cells Constitute a Type I-Oriented Tumor Microenvironment to Improve Survival in HPV16-Driven Oropharyngeal Cancer

Comprehensive characterization of the prostate tumor microenvironment identifies CXCR4/CXCL12 crosstalk as a novel antiangiogenic therapeutic target in prostate cancer

Gene expression profiling of human mesenchymal stem cells derived from bone marrow during expansion and osteoblast differentiation

Type, Density, and Location of Immune Cells Within Human Colorectal Tumors Predict Clinical Outcome

Nuclear receptor NR2F6 inhibition potentiates responses to PD-L1/PD-1 cancer immune checkpoint blockade

miR-22 and miR-29a Are Members of the Androgen Receptor Cistrome Modulating LAMC1 and Mcl-1 in Prostate Cancer

Epithelial X-Box Binding Protein 1 Coordinates Tumor Protein p53-Driven DNA Damage Responses and Suppression of Intestinal Carcinogenesis

Comprehensive Analysis of R-Spondin Fusions and RNF43 Mutations Implicate Novel Therapeutic Options in Colorectal Cancer

Coordination of Intratumoral Immune Reaction and Human Colorectal Cancer Recurrence

Protocol for functional profiling of patient-derived organoids for precision oncology

miR‐17, miR‐19b, miR‐20a, and miR‐106a are down‐regulated in human aging

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