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Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals

Scientific reports, 2020-09, Vol.10 (1), p.14977-14977, Article 14977

2020

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Abundance and diversity of resistomes differ between healthy human oral cavities and gut

Nature communications, 2020-02, Vol.11 (1), p.693-10, Article 693

2020

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The Intestine Harbors Functionally Distinct Homeostatic Tissue-Resident and Inflammatory Th17 Cells

Immunity (Cambridge, Mass.), 2019-07, Vol.51 (1), p.77-89.e6

2019

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The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum

PLoS computational biology, 2013-03, Vol.9 (3), p.e1002980-e1002980

2013

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The gut microbiota modulates host amino acid and glutathione metabolism in mice

Molecular systems biology, 2015-10, Vol.11 (10), p.834-n/a

2015

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Irritable bowel syndrome and microbiome; Switching from conventional diagnosis and therapies to personalized interventions

Journal of translational medicine, 2022-04, Vol.20 (1), p.173-173, Article 173

2022

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Understanding the interactions between bacteria in the human gut through metabolic modeling

Scientific reports, 2013-08, Vol.3 (1), p.2532-2532, Article 2532

2013

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MIGRENE: The Toolbox for Microbial and Individualized GEMs, Reactobiome and Community Network Modelling

Metabolites, 2024-02, Vol.14 (3), p.132

2024

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Systematic analysis of gut microbiome reveals the role of bacterial folate and homocysteine metabolism in Parkinson’s disease

Cell reports (Cambridge), 2021-03, Vol.34 (9), p.108807-108807, Article 108807

2021

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Candidalysin Drives Epithelial Signaling, Neutrophil Recruitment, and Immunopathology at the Vaginal Mucosa

Infection and immunity, 2018-02, Vol.86 (2)

2018

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Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome

Cell metabolism, 2015-08, Vol.22 (2), p.320-331

2015

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Synergies of Systems Biology and Synthetic Biology in Human Microbiome Studies

Frontiers in microbiology, 2021-08, Vol.12, p.681982-681982

2021

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Simplified Intestinal Microbiota to Study Microbe-Diet-Host Interactions in a Mouse Model

Cell reports (Cambridge), 2019-03, Vol.26 (13), p.3772-3783.e6

2019

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Drug repositioning targeting glutaminase reveals drug candidates for the treatment of Alzheimer's disease patients

Journal of translational medicine, 2023-05, Vol.21 (1), p.332-332, Article 332

2023

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Systems Biology Approaches to Understand the Host–Microbiome Interactions in Neurodegenerative Diseases

Frontiers in neuroscience, 2020-07, Vol.14, p.716-716

2020

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Discovery of a Therapeutic Agent for Glioblastoma Using a Systems Biology-Based Drug Repositioning Approach

International journal of molecular sciences, 2024-07, Vol.25 (14), p.7868

2024

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Advances in the Relationships Between Cow’s Milk Protein Allergy and Gut Microbiota in Infants

Frontiers in microbiology, 2021-08, Vol.12

2021

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Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients

Molecular systems biology, 2021-10, Vol.17 (10), p.e10459-n/a

2021

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Understanding the Representative Gut Microbiota Dysbiosis in Metformin-Treated Type 2 Diabetes Patients Using Genome-Scale Metabolic Modeling

Frontiers in physiology, 2018, Vol.9 (JUN), p.775-775

2018

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Host-mycobiome metabolic interactions in health and disease

Gut microbes, 2022-12, Vol.14 (1), p.2121576-2121576

2022

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Body composition after allogeneic haematopoietic cell transplantation/total body irradiation in children and young people: a restricted systematic review

Journal of cancer survivorship, 2020-10, Vol.14 (5), p.624-642

2020

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Systems Biology Approaches to Decipher the Underlying Molecular Mechanisms of Glioblastoma Multiforme

International journal of molecular sciences, 2021-12, Vol.22 (24), p.13213

2021

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Revealing the Molecular Mechanisms of Alzheimer's Disease Based on Network Analysis

International journal of molecular sciences, 2021-10, Vol.22 (21), p.11556

2021

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Combined Metabolic Activators Accelerates Recovery in Mild‐to‐Moderate COVID‐19

Advanced science, 2021-09, Vol.8 (17), p.e2101222-n/a

2021

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Metabolic modelling of the human gut microbiome in type 2 diabetes patients in response to metformin treatment

NPJ systems biology and applications, 2023-01, Vol.9 (1), p.2-8, Article 2

2023

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Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals

Abundance and diversity of resistomes differ between healthy human oral cavities and gut

The Intestine Harbors Functionally Distinct Homeostatic Tissue-Resident and Inflammatory Th17 Cells

The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum

The gut microbiota modulates host amino acid and glutathione metabolism in mice

Irritable bowel syndrome and microbiome; Switching from conventional diagnosis and therapies to personalized interventions

Understanding the interactions between bacteria in the human gut through metabolic modeling

MIGRENE: The Toolbox for Microbial and Individualized GEMs, Reactobiome and Community Network Modelling

Systematic analysis of gut microbiome reveals the role of bacterial folate and homocysteine metabolism in Parkinson’s disease

Candidalysin Drives Epithelial Signaling, Neutrophil Recruitment, and Immunopathology at the Vaginal Mucosa

Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome

Synergies of Systems Biology and Synthetic Biology in Human Microbiome Studies

Simplified Intestinal Microbiota to Study Microbe-Diet-Host Interactions in a Mouse Model

Drug repositioning targeting glutaminase reveals drug candidates for the treatment of Alzheimer's disease patients

Systems Biology Approaches to Understand the Host–Microbiome Interactions in Neurodegenerative Diseases

Discovery of a Therapeutic Agent for Glioblastoma Using a Systems Biology-Based Drug Repositioning Approach

Advances in the Relationships Between Cow’s Milk Protein Allergy and Gut Microbiota in Infants

Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients

Understanding the Representative Gut Microbiota Dysbiosis in Metformin-Treated Type 2 Diabetes Patients Using Genome-Scale Metabolic Modeling

Host-mycobiome metabolic interactions in health and disease

Body composition after allogeneic haematopoietic cell transplantation/total body irradiation in children and young people: a restricted systematic review

Systems Biology Approaches to Decipher the Underlying Molecular Mechanisms of Glioblastoma Multiforme

Revealing the Molecular Mechanisms of Alzheimer's Disease Based on Network Analysis

Combined Metabolic Activators Accelerates Recovery in Mild‐to‐Moderate COVID‐19

Metabolic modelling of the human gut microbiome in type 2 diabetes patients in response to metformin treatment

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