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r2cat: synteny plots and comparative assembly

Bioinformatics, 2010-02, Vol.26 (4), p.570-571

2010

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Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

Bioinformatics (Oxford, England), 2011-05, Vol.27 (10), p.1351-1358

2011

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Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma

Carcinogenesis (New York), 2016-04, Vol.37 (4), p.356-365

2016

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UniMoG—a unifying framework for genomic distance calculation and sorting based on DCJ

Bioinformatics (Oxford, England), 2012-10, Vol.28 (19), p.2509-2511

2012

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Finding novel genes in bacterial communities isolated from the environment

Bioinformatics, 2006-07, Vol.22 (14), p.e281-e289

2006

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Detecting high-scoring local alignments in pangenome graphs

Bioinformatics (Oxford, England), 2021-08, Vol.37 (16), p.2266-2274

2021

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ChromA: signal-based retention time alignment for chromatography–mass spectrometry data

Bioinformatics, 2009-08, Vol.25 (16), p.2080-2081

2009

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ReadXplorer--visualization and analysis of mapped sequences

Bioinformatics (Oxford, England), 2014-08, Vol.30 (16), p.2247-2254

2014

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Horizontal Gene Transfer Phylogenetics: A Random Walk Approach

Molecular biology and evolution, 2020-05, Vol.37 (5), p.1470-1479

2020

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HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets

Molecular biology and evolution, 2023-03, Vol.40 (3), p.1-12

2023

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BiPACE 2D--graph-based multiple alignment for comprehensive 2D gas chromatography-mass spectrometry

Bioinformatics, 2014-04, Vol.30 (7), p.988-995

2014

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Rose : generating sequence families

Bioinformatics (Oxford, England), 1998, Vol.14 (2), p.157-163

1998

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A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG)

Bioinformatics, 2009-11, Vol.25 (21), p.2863-2864

2009

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An iterative method for faster sum-of-pairs multiple sequence alignment

Bioinformatics, 2000-09, Vol.16 (9), p.808-814

2000

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Panta rhei (QAlign2): an open graphical environment for sequence analysis

Bioinformatics, 2006-04, Vol.22 (7), p.889-890

2006

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Divide-and-conquer multiple alignment with segment-based constraints

Bioinformatics, 2003-09, Vol.19 (suppl-2), p.ii189-ii195

2003

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Panta rhei (QAlign2) : an open graphical environment for sequence analysis

Bioinformatics (Oxford, England), 2006, Vol.22 (7), p.891-893

2006

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BACCardl-a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison

Bioinformatics (Oxford, England), 2005-04, Vol.21 (7), p.853-859

2005

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BACCardI—a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison

Bioinformatics, 2005-04, Vol.21 (7), p.853-859

2005

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DCA: an efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment

Bioinformatics, 1997-12, Vol.13 (6), p.625-626

1997

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r2cat: synteny plots and comparative assembly

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma

UniMoG—a unifying framework for genomic distance calculation and sorting based on DCJ

Finding novel genes in bacterial communities isolated from the environment

Detecting high-scoring local alignments in pangenome graphs

ChromA: signal-based retention time alignment for chromatography–mass spectrometry data

ReadXplorer--visualization and analysis of mapped sequences

Horizontal Gene Transfer Phylogenetics: A Random Walk Approach

HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets

BiPACE 2D--graph-based multiple alignment for comprehensive 2D gas chromatography-mass spectrometry

Rose : generating sequence families

A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG)

An iterative method for faster sum-of-pairs multiple sequence alignment

Panta rhei (QAlign2): an open graphical environment for sequence analysis

Divide-and-conquer multiple alignment with segment-based constraints

Panta rhei (QAlign2) : an open graphical environment for sequence analysis

BACCardl-a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison

BACCardI—a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison

DCA: an efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment

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