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Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

Cell, 2021-04, Vol.184 (8), p.2239-2254.e39

2021

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Circulating-tumor DNA as an early detection and diagnostic tool

Current opinion in genetics & development, 2017-02, Vol.42, p.14-21

2017

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Detecting cancer by monitoring circulating tumor DNA

Nature medicine, 2014-05, Vol.20 (5), p.474-475

2014

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Exome Sequencing of Cell-Free DNA from Metastatic Cancer Patients Identifies Clinically Actionable Mutations Distinct from Primary Disease

PloS one, 2015-08, Vol.10 (8), p.e0136407

2015

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Differentiation-state plasticity is a targetable resistance mechanism in basal-like breast cancer

Nature communications, 2018-09, Vol.9 (1), p.3815-17, Article 3815

2018

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Subtype and pathway specific responses to anticancer compounds in breast cancer

Proceedings of the National Academy of Sciences - PNAS, 2012-02, Vol.109 (8), p.2724-2729

2012

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Integrated analysis of germline and somatic variants in ovarian cancer

Nature communications, 2014-01, Vol.5 (1), p.3156-3156, Article 3156

2014

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Epigenetic loss of heterogeneity from low to high grade localized prostate tumours

Nature communications, 2021-12, Vol.12 (1), p.7292-7292, Article 7292

2021

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Loss-of-function mutations in Notch receptors in cutaneous and lung squamous cell carcinoma

Proceedings of the National Academy of Sciences - PNAS, 2011-10, Vol.108 (43), p.17761-17766

2011

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Epigenetic control of chromosome-associated lncRNA genes essential for replication and stability

Nature communications, 2022-10, Vol.13 (1), p.6301-19, Article 6301

2022

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A central role for RAF→MEK→ERK signaling in the genesis of pancreatic ductal adenocarcinoma

Cancer discovery, 2012-08, Vol.2 (8), p.685-693

2012

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Phylogenetic analyses of melanoma reveal complex patterns of metastatic dissemination

Proceedings of the National Academy of Sciences - PNAS, 2015-09, Vol.112 (35), p.10995-11000

2015

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Genomic and transcriptional aberrations linked to breast cancer pathophysiologies

Cancer cell, 2006-12, Vol.10 (6), p.529-541

2006

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A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes

Cancer cell, 2006-12, Vol.10 (6), p.515-527

2006

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Basal Subtype and MAPK/ERK Kinase (MEK)-Phosphoinositide 3-Kinase Feedback Signaling Determine Susceptibility of Breast Cancer Cells to MEK Inhibition

Cancer research (Chicago, Ill.), 2009-01, Vol.69 (2), p.565-572

2009

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An open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences

BMC genomics, 2023-06, Vol.24 (1), p.349-349, Article 349

2023

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Multiregion exome sequencing of ovarian immature teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and disseminated components

Modern pathology, 2020-06, Vol.33 (6), p.1193-1206

2020

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Diurnal stability of cell-free DNA and cell-free RNA in human plasma samples

Scientific reports, 2020-10, Vol.10 (1), p.16456-16456, Article 16456

2020

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Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

Nature protocols, 2009-08, Vol.4 (8), p.1184-1191

2009

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Integrated analyses of microRNAs demonstrate their widespread influence on gene expression in high-grade serous ovarian carcinoma

PloS one, 2012-03, Vol.7 (3), p.e34546-e34546

2012

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Parent-specific copy number in paired tumor-normal studies using circular binary segmentation

Bioinformatics, 2011-08, Vol.27 (15), p.2038-2046

2011

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Genome-Wide Analysis of the Drosophila Immune Response by Using Oligonucleotide Microarrays

Proceedings of the National Academy of Sciences - PNAS, 2001-10, Vol.98 (22), p.12590-12595

2001

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Cluster analysis and display of genome-wide expression patterns

Proceedings of the National Academy of Sciences - PNAS, 1998-12, Vol.95 (25), p.14863-14868

1998

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Human Tumor-Associated Macrophage and Monocyte Transcriptional Landscapes Reveal Cancer-Specific Reprogramming, Biomarkers, and Therapeutic Targets

Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

Circulating-tumor DNA as an early detection and diagnostic tool

Detecting cancer by monitoring circulating tumor DNA

Exome Sequencing of Cell-Free DNA from Metastatic Cancer Patients Identifies Clinically Actionable Mutations Distinct from Primary Disease

Differentiation-state plasticity is a targetable resistance mechanism in basal-like breast cancer

Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1

Subtype and pathway specific responses to anticancer compounds in breast cancer

Integrated analysis of germline and somatic variants in ovarian cancer

Epigenetic loss of heterogeneity from low to high grade localized prostate tumours

Loss-of-function mutations in Notch receptors in cutaneous and lung squamous cell carcinoma

Epigenetic control of chromosome-associated lncRNA genes essential for replication and stability

A central role for RAF→MEK→ERK signaling in the genesis of pancreatic ductal adenocarcinoma

Phylogenetic analyses of melanoma reveal complex patterns of metastatic dissemination

Genomic and transcriptional aberrations linked to breast cancer pathophysiologies

A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes

Basal Subtype and MAPK/ERK Kinase (MEK)-Phosphoinositide 3-Kinase Feedback Signaling Determine Susceptibility of Breast Cancer Cells to MEK Inhibition

An open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences

Multiregion exome sequencing of ovarian immature teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and disseminated components

Diurnal stability of cell-free DNA and cell-free RNA in human plasma samples

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

Integrated analyses of microRNAs demonstrate their widespread influence on gene expression in high-grade serous ovarian carcinoma

Parent-specific copy number in paired tumor-normal studies using circular binary segmentation

Genome-Wide Analysis of the Drosophila Immune Response by Using Oligonucleotide Microarrays

Cluster analysis and display of genome-wide expression patterns

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