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Resolving host-pathogen interactions by dual RNA-seq

PLoS Pathogens, 2017-02, Vol.13 (2), p.e1006033-e1006033

2017

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Host-Pathogen Transcriptomics by Dual RNA-Seq

Methods in molecular biology (Clifton, N.J.), 2018, Vol.1737, p.59

2018

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Differential activation and functional specialization of miR-146 and miR-155 in innate immune sensing

Nucleic acids research, 2013-01, Vol.41 (1), p.542

2013

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A high-resolution transcriptome map identifies small RNA regulation of metabolism in the gut microbe Bacteroides thetaiotaomicron

Nature communications, 2020-07, Vol.11 (1), p.3557-3557, Article 3557

2020

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RNA target profiles direct the discovery of virulence functions for the cold-shock proteins CspC and CspE

Proceedings of the National Academy of Sciences - PNAS, 2017-06, Vol.114 (26), p.6824-6829

2017

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Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA reads

RNA (Cambridge), 2020-08, Vol.26 (8), p.1069-1078

2020

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An NK Cell Perforin Response Elicited via IL-18 Controls Mucosal Inflammation Kinetics during Salmonella Gut Infection

PLoS pathogens, 2016-06, Vol.12 (6), p.e1005723-e1005723

2016

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The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium

mBio, 2019-01, Vol.10 (1)

2019

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CRP-cAMP mediates silencing of Salmonella virulence at the post-transcriptional level

PLoS genetics, 2018-06, Vol.14 (6), p.e1007401-e1007401

2018

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Dual RNA-seq of Orientia tsutsugamushi informs on host-pathogen interactions for this neglected intracellular human pathogen

Nature communications, 2020-07, Vol.11 (1), p.3363-3363, Article 3363

2020

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Transkriptomik über Artgrenzen hinweg

Biospektrum, 2022-06, Vol.28 (4), p.381-384

Westermann, Alexander J.

2022

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Induced Pluripotent Stem Cell-Derived Brain Endothelial Cells as a Cellular Model to Study Neisseria meningitidis Infection

Frontiers in microbiology, 2019-05, Vol.10, p.1181-1181

2019

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The ambivalent role of Bacteroides in enteric infections

Trends in microbiology (Regular ed.), 2022-02, Vol.30 (2), p.104-108

2022

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Triple RNA-Seq Reveals Synergy in a Human Virus-Fungus Co-infection Model

Cell reports (Cambridge), 2020-11, Vol.33 (7), p.108389-108389, Article 108389

2020

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Dual RNA-seq of pathogen and host

Nature reviews. Microbiology, 2012-09, Vol.10 (9), p.618-630

2012

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Single-cell RNA-seq: advances and future challenges

Nucleic acids research, 2014-08, Vol.42 (14), p.8845

2014

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A primary cell-based in vitro model of the human small intestine reveals host olfactomedin 4 induction in response to Salmonella Typhimurium infection

Gut microbes, 2023, Vol.15 (1), p.2186109-2186109

2023

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CRISPR Interference-Based Functional Small RNA Genomics

Methods in molecular biology (Clifton, N.J.), 2024, Vol.2741, p.101

2024

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Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions

Nature (London), 2016-01, Vol.529 (7587), p.496-501

2016

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SPI2 T3SS effectors facilitate enterocyte apical to basolateral transmigration of Salmonella -containing vacuoles in vivo

Gut microbes, 2021-01, Vol.13 (1), p.1973836-1973836

2021

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Salmonella persisters undermine host immune defenses during antibiotic treatment

Science (American Association for the Advancement of Science), 2018-12, Vol.362 (6419), p.1156-1160

2018

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CRISPR-based screening of small RNA modulators of bile susceptibility in Bacteroides thetaiotaomicron

Proceedings of the National Academy of Sciences - PNAS, 2024-02, Vol.121 (6), p.e2311323121

2024

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Improved RNA stability estimation through Bayesian modeling reveals most Salmonella transcripts have subminute half-lives

Proceedings of the National Academy of Sciences - PNAS, 2024-04, Vol.121 (14), p.e2308814121

2024

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Regulatory RNAs in Virulence and Host-Microbe Interactions

Microbiology spectrum, 2018-07, Vol.6 (4)

2018

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Aktuell

Biospektrum, 2021-02, Vol.27 (1), p.60-61

2021

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Resolving host-pathogen interactions by dual RNA-seq

Host-Pathogen Transcriptomics by Dual RNA-Seq

Differential activation and functional specialization of miR-146 and miR-155 in innate immune sensing

A high-resolution transcriptome map identifies small RNA regulation of metabolism in the gut microbe Bacteroides thetaiotaomicron

RNA target profiles direct the discovery of virulence functions for the cold-shock proteins CspC and CspE

Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA reads

An NK Cell Perforin Response Elicited via IL-18 Controls Mucosal Inflammation Kinetics during Salmonella Gut Infection

The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium

CRP-cAMP mediates silencing of Salmonella virulence at the post-transcriptional level

Dual RNA-seq of Orientia tsutsugamushi informs on host-pathogen interactions for this neglected intracellular human pathogen

Transkriptomik über Artgrenzen hinweg

Induced Pluripotent Stem Cell-Derived Brain Endothelial Cells as a Cellular Model to Study Neisseria meningitidis Infection

The ambivalent role of Bacteroides in enteric infections

Triple RNA-Seq Reveals Synergy in a Human Virus-Fungus Co-infection Model

Dual RNA-seq of pathogen and host

Single-cell RNA-seq: advances and future challenges

A primary cell-based in vitro model of the human small intestine reveals host olfactomedin 4 induction in response to Salmonella Typhimurium infection

CRISPR Interference-Based Functional Small RNA Genomics

Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions

SPI2 T3SS effectors facilitate enterocyte apical to basolateral transmigration of Salmonella -containing vacuoles in vivo

Salmonella persisters undermine host immune defenses during antibiotic treatment

CRISPR-based screening of small RNA modulators of bile susceptibility in Bacteroides thetaiotaomicron

Improved RNA stability estimation through Bayesian modeling reveals most Salmonella transcripts have subminute half-lives

Regulatory RNAs in Virulence and Host-Microbe Interactions

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