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Evolution of Resistance to a Last-Resort Antibiotic in Staphylococcus aureus via Bacterial Competition

Cell, 2014-08, Vol.158 (5), p.1060-1071

2014

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Grad-seq guides the discovery of ProQ as a major small RNA-binding protein

Proceedings of the National Academy of Sciences - PNAS, 2016-10, Vol.113 (41), p.11591-11596

2016

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Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli

Journal of bacteriology, 2015-01, Vol.197 (1), p.18-28

2015

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In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways

Molecular cell, 2017-01, Vol.65 (1), p.39-51

2017

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Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation

Proceedings of the National Academy of Sciences - PNAS, 2015-02, Vol.112 (7), p.E766-E775

2015

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READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data

Bioinformatics, 2014-12, Vol.30 (23), p.3421-3423

2014

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Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli

Nucleic acids research, 2020-09, Vol.48 (16), p.9301-9319

2020

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Ten simple rules for implementing electronic lab notebooks (ELNs)

PLoS computational biology, 2024-06, Vol.20 (6), p.e1012170

2024

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CoLoC-seq probes the global topology of organelle transcriptomes

Nucleic acids research, 2023-02, Vol.51 (3), p.e16-e16

2023

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Functional high-throughput screening identifies the miR-15 microRNA family as cellular restriction factors for Salmonella infection

Nature communications, 2014-08, Vol.5 (1), p.4718-4718, Article 4718

2014

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The Primary Transcriptome of Barley Chloroplasts: Numerous Noncoding RNAs and the Dominating Role of the Plastid-Encoded RNA Polymerase

The Plant cell, 2012-01, Vol.24 (1), p.123-136

2012

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Gene autoregulation by 3' UTR-derived bacterial small RNAs

eLife, 2020-08, Vol.9

2020

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Insights into Microalga and Bacteria Interactions of Selected Phycosphere Biofilms Using Metagenomic, Transcriptomic, and Proteomic Approaches

Frontiers in microbiology, 2017-10, Vol.8, p.1941-1941

2017

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The induction of natural competence adapts staphylococcal metabolism to infection

Nature communications, 2022-03, Vol.13 (1), p.1525-17, Article 1525

2022

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The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium

mBio, 2019-01, Vol.10 (1)

2019

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Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq

PloS one, 2019-04, Vol.14 (4), p.e0215986-e0215986

2019

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Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis

BMC genomics, 2014-08, Vol.15 (1), p.684-684

2014

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The small non-coding RNA RsaE influences extracellular matrix composition in Staphylococcus epidermidis biofilm communities

PLoS pathogens, 2019-03, Vol.15 (3), p.e1007618-e1007618

2019

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Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens

PloS one, 2014-10, Vol.9 (10), p.e110427-e110427

2014

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ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes

Gigascience, 2018-09, Vol.7 (9)

2018

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Differences in the Transcriptomic Response of Campylobacter coli and Campylobacter lari to Heat Stress

Frontiers in microbiology, 2020-03, Vol.11, p.523-523

2020

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Dual-RNAseq Analysis Unravels Virus-Host Interactions of MetSV and Methanosarcina mazei

Viruses, 2022-11, Vol.14 (11), p.2585

2022

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sRNA154 a newly identified regulator of nitrogen fixation in Methanosarcina mazei strain Gö1

RNA biology, 2017-11, Vol.14 (11), p.1544-1558

2017

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Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

BMC genomics, 2015-10, Vol.16 (1), p.775-775, Article 775

2015

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A New Bioactive Compound From the Marine Sponge-Derived Streptomyces sp. SBT348 Inhibits Staphylococcal Growth and Biofilm Formation

Frontiers in microbiology, 2018-07, Vol.9, p.1473-1473

2018

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Evolution of Resistance to a Last-Resort Antibiotic in Staphylococcus aureus via Bacterial Competition

Grad-seq guides the discovery of ProQ as a major small RNA-binding protein

Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli

In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways

Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation

READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data

Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli

Ten simple rules for implementing electronic lab notebooks (ELNs)

CoLoC-seq probes the global topology of organelle transcriptomes

Functional high-throughput screening identifies the miR-15 microRNA family as cellular restriction factors for Salmonella infection

The Primary Transcriptome of Barley Chloroplasts: Numerous Noncoding RNAs and the Dominating Role of the Plastid-Encoded RNA Polymerase

Gene autoregulation by 3' UTR-derived bacterial small RNAs

Insights into Microalga and Bacteria Interactions of Selected Phycosphere Biofilms Using Metagenomic, Transcriptomic, and Proteomic Approaches

The induction of natural competence adapts staphylococcal metabolism to infection

The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium

Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq

Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis

The small non-coding RNA RsaE influences extracellular matrix composition in Staphylococcus epidermidis biofilm communities

Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens

ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes

Differences in the Transcriptomic Response of Campylobacter coli and Campylobacter lari to Heat Stress

Dual-RNAseq Analysis Unravels Virus-Host Interactions of MetSV and Methanosarcina mazei

sRNA154 a newly identified regulator of nitrogen fixation in Methanosarcina mazei strain Gö1

Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

A New Bioactive Compound From the Marine Sponge-Derived Streptomyces sp. SBT348 Inhibits Staphylococcal Growth and Biofilm Formation

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