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Identification of neoantigens for individualized therapeutic cancer vaccines

Nature reviews. Drug discovery, 2022-04, Vol.21 (4), p.261-282

2022

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Large-scale analysis of SARS-CoV-2 spike-glycoprotein mutants demonstrates the need for continuous screening of virus isolates

PloS one, 2021-09, Vol.16 (9), p.e0249254-e0249254

2021

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Prediction of type III secretion signals in genomes of gram-negative bacteria

PloS one, 2009-06, Vol.4 (6), p.e5917-e5917

2009

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Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution

Nature communications, 2018-01, Vol.9 (1), p.32-32, Article 32

2018

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Integrative analysis of structural variations using short-reads and linked-reads yields highly specific and sensitive predictions

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008397-e1008397

2020

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Improving mRNA-Based Therapeutic Gene Delivery by Expression-Augmenting 3′ UTRs Identified by Cellular Library Screening

Molecular therapy, 2019-04, Vol.27 (4), p.824-836

2019

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Exploiting the Mutanome for Tumor Vaccination

Cancer research (Chicago, Ill.), 2012-03, Vol.72 (5), p.1081-1091

2012

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Multi-Omics Characterization of the 4T1 Murine Mammary Gland Tumor Model

Frontiers in oncology, 2020-07, Vol.10, p.1195-1195

2020

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HLA and proteasome expression body map

BMC medical genomics, 2018-03, Vol.11 (1), p.36-36, Article 36

2018

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Inhibitors of Helicobacter pylori protease HtrA found by 'virtual ligand' screening combat bacterial invasion of epithelia

PloS one, 2011-03, Vol.6 (3), p.e17986-e17986

2011

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HLA typing from RNA-Seq sequence reads

Genome medicine, 2012-12, Vol.4 (12), p.102-102

2012

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Digital genome-wide ncRNA expression, including SnoRNAs, across 11 human tissues using polyA-neutral amplification

PloS one, 2010-07, Vol.5 (7), p.e11779-e11779

2010

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A catalog of HLA type, HLA expression, and neo-epitope candidates in human cancer cell lines

Oncoimmunology, 2014-08, Vol.3 (8), p.e954893-e954893

2014

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MC38 colorectal tumor cell lines from two different sources display substantial differences in transcriptome, mutanome and neoantigen expression

Frontiers in immunology, 2023-03, Vol.14, p.1102282-1102282

2023

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CoVigator-A Knowledge Base for Navigating SARS-CoV-2 Genomic Variants

Viruses, 2023-06, Vol.15 (6), p.1391

2023

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Prediction of extracellular proteases of the human pathogen Helicobacter pylori reveals proteolytic activity of the Hp1018/19 protein HtrA

PloS one, 2008-10, Vol.3 (10), p.e3510-e3510

2008

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Comprehensive Genomic and Transcriptomic Analysis of Three Synchronous Primary Tumours and a Recurrence from a Head and Neck Cancer Patient

International journal of molecular sciences, 2021-07, Vol.22 (14), p.7583

2021

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Adhesion, Invasion, and Agglutination Mediated by Two Trimeric Autotransporters in the Human Uropathogen Proteus mirabilis

Infection and Immunity, 2010-11, Vol.78 (11), p.4882-4894

2010

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Tick Salivary Sialostatin L Represses the Initiation of Immune Responses by Targeting IRF4-Dependent Transcription in Murine Mast Cells

The Journal of immunology (1950), 2015-07, Vol.195 (2), p.621-631

2015

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Challenges towards the realization of individualized cancer vaccines

Nature biomedical engineering, 2018-08, Vol.2 (8), p.566

2018

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Mutanome Engineered RNA Immunotherapy: Towards Patient-Centered Tumor Vaccination

Journal of immunology research, 2015-01, Vol.2015, p.595363-6

2015

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Confidence-based somatic mutation evaluation and prioritization

PLoS computational biology, 2012-09, Vol.8 (9), p.e1002714-e1002714

2012

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Correction: Prediction of Type III Secretion Signals in Genomes of Gram-Negative Bacteria

PloS one, 2009-07, Vol.4 (7)

2009

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rapmad: Robust analysis of peptide microarray data

BMC bioinformatics, 2011-08, Vol.12 (1), p.324-324, Article 324

2011

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Identification of neoantigens for individualized therapeutic cancer vaccines

Large-scale analysis of SARS-CoV-2 spike-glycoprotein mutants demonstrates the need for continuous screening of virus isolates

Prediction of type III secretion signals in genomes of gram-negative bacteria

Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution

Integrative analysis of structural variations using short-reads and linked-reads yields highly specific and sensitive predictions

Improving mRNA-Based Therapeutic Gene Delivery by Expression-Augmenting 3′ UTRs Identified by Cellular Library Screening

Exploiting the Mutanome for Tumor Vaccination

Multi-Omics Characterization of the 4T1 Murine Mammary Gland Tumor Model

HLA and proteasome expression body map

Inhibitors of Helicobacter pylori protease HtrA found by 'virtual ligand' screening combat bacterial invasion of epithelia

HLA typing from RNA-Seq sequence reads

Digital genome-wide ncRNA expression, including SnoRNAs, across 11 human tissues using polyA-neutral amplification

A catalog of HLA type, HLA expression, and neo-epitope candidates in human cancer cell lines

MC38 colorectal tumor cell lines from two different sources display substantial differences in transcriptome, mutanome and neoantigen expression

CoVigator-A Knowledge Base for Navigating SARS-CoV-2 Genomic Variants

Prediction of extracellular proteases of the human pathogen Helicobacter pylori reveals proteolytic activity of the Hp1018/19 protein HtrA

Comprehensive Genomic and Transcriptomic Analysis of Three Synchronous Primary Tumours and a Recurrence from a Head and Neck Cancer Patient

Adhesion, Invasion, and Agglutination Mediated by Two Trimeric Autotransporters in the Human Uropathogen Proteus mirabilis

Tick Salivary Sialostatin L Represses the Initiation of Immune Responses by Targeting IRF4-Dependent Transcription in Murine Mast Cells

Challenges towards the realization of individualized cancer vaccines

Mutanome Engineered RNA Immunotherapy: Towards Patient-Centered Tumor Vaccination

A Set of Cell Lines Derived from a Genetic Murine Glioblastoma Model Recapitulates Molecular and Morphological Characteristics of Human Tumors

Confidence-based somatic mutation evaluation and prioritization

Correction: Prediction of Type III Secretion Signals in Genomes of Gram-Negative Bacteria

rapmad: Robust analysis of peptide microarray data

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