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Guidelines for correlation coefficient threshold settings in metabolite correlation networks exemplified on a potato association panel

BMC bioinformatics, 2021-03, Vol.22 (1), p.116-116, Article 116

2021

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Metabolite profiling and network analysis reveal coordinated changes in grapevine water stress response

BMC plant biology, 2013-11, Vol.13 (1), p.184-184, Article 184

2013

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Network analysis: tackling complex data to study plant metabolism

Trends in biotechnology (Regular ed.), 2013-01, Vol.31 (1), p.29-36

2013

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Ambivalent role of calcium in the viscoelastic properties of extracellular polymeric substances and the consequent fouling of reverse osmosis membranes

Desalination, 2018-03, Vol.429, p.12-19

2018

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Metabolic profiling of a mapping population exposes new insights in the regulation of seed metabolism and seed, fruit, and plant relations

PLoS genetics, 2012-03, Vol.8 (3), p.e1002612-e1002612

2012

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The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

BMC plant biology, 2017-05, Vol.17 (1), p.94-94, Article 94

2017

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Combined Transcriptomics and Metabolomics of Arabidopsis thaliana Seedlings Exposed to Exogenous GABA Suggest Its Role in Plants Is Predominantly Metabolic

Molecular plant, 2014-06, Vol.7 (6), p.1065-1068

2014

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The effect of circular soil biosolarization treatment on the physiology, metabolomics, and microbiome of tomato plants under certain abiotic stresses

Frontiers in plant science, 2022-11, Vol.13, p.1009956-1009956

2022

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Colicin E2 expression in Escherichia coli biofilms: Induction and regulation revisited

Current research in microbial sciences, 2022-01, Vol.3, p.100171-100171, Article 100171

2022

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Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays

Frontiers in plant science, 2016-07, Vol.7, p.1022-1022

2016

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Ethylene Response of Plum ACC Synthase 1 (ACS1) Promoter is Mediated through the Binding Site of Abscisic Acid Insensitive 5 (ABI5)

Plants (Basel), 2019-05, Vol.8 (5), p.117

2019

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Mechanisms of hormonal regulation of endosperm cap‐specific gene expression in tomato seeds

The Plant journal : for cell and molecular biology, 2012-08, Vol.71 (4), p.575-586

2012

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Correlation-Based Network Generation, Visualization, and Analysis as a Powerful Tool in Biological Studies: A Case Study in Cancer Cell Metabolism

BioMed research international, 2016-01, Vol.2016, p.8313272-9

2016

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The investment in scent: time-resolved metabolic processes in developing volatile-producing Nigella sativa L. seeds

PloS one, 2013-09, Vol.8 (9), p.e73061-e73061

2013

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Genome-wide transcription profiling of aerobic and anaerobic Escherichia coli biofilm and planktonic cultures

FEMS microbiology letters, 2017-02, Vol.364 (3), p.fnx006

2017

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A Genetic Algorithm to Optimize Weighted Gene Co-Expression Network Analysis

Journal of computational biology, 2019-12, Vol.26 (12), p.1349-1366

2019

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Mass spectrometry-based metabolite profiling reveals functional seasonal shifts in the metabolome of Zygophyllum dumosum Boiss and its relation to environmental conditions

Planta, 2023-07, Vol.258 (1), p.10-10, Article 10

2023

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Regional features of northern Italian sparkling wines, identified using solid-phase micro extraction and comprehensive two-dimensional gas chromatography coupled with time-of-flight mass spectrometry

Food chemistry, 2016-10, Vol.208, p.68-80

2016

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NMR-based leaf metabolic profiling of V. planifolia and three endemic Vanilla species from the Peruvian Amazon

Food chemistry, 2021-10, Vol.358, p.129365-129365, Article 129365

2021

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NMR-based metabolic study of fruits of Physalis peruviana L. grown in eight different Peruvian ecosystems

Food chemistry, 2018-10, Vol.262, p.94-101

2018

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The Alteration of Tomato Chloroplast Vesiculation Positively Affects Whole-Plant Source-Sink Relations and Fruit Metabolism under Stress Conditions

Plant and cell physiology, 2023-01, Vol.63 (12), p.2008-2026

2023

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Bet-hedging in bacteriocin producing Escherichia coli populations: the single cell perspective

Scientific reports, 2017-02, Vol.7 (1), p.42068-42068, Article 42068

2017

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Hormone balance in a climacteric plum fruit and its non-climacteric bud mutant during ripening

Plant science (Limerick), 2019-03, Vol.280, p.51-65

2019

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Environmental and genetic effects on tomato seed metabolic balance and its association with germination vigor

BMC genomics, 2016-12, Vol.17 (1), p.1047-1047, Article 1047

2016

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Combined correlation‐based network and mQTL analyses efficiently identified loci for branched‐chain amino acid, serine to threonine, and proline metabolism in tomato seeds

The Plant journal : for cell and molecular biology, 2015-01, Vol.81 (1), p.121-133

2015

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Guidelines for correlation coefficient threshold settings in metabolite correlation networks exemplified on a potato association panel

Metabolite profiling and network analysis reveal coordinated changes in grapevine water stress response

Network analysis: tackling complex data to study plant metabolism

Ambivalent role of calcium in the viscoelastic properties of extracellular polymeric substances and the consequent fouling of reverse osmosis membranes

Metabolic profiling of a mapping population exposes new insights in the regulation of seed metabolism and seed, fruit, and plant relations

The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

Combined Transcriptomics and Metabolomics of Arabidopsis thaliana Seedlings Exposed to Exogenous GABA Suggest Its Role in Plants Is Predominantly Metabolic

The effect of circular soil biosolarization treatment on the physiology, metabolomics, and microbiome of tomato plants under certain abiotic stresses

Colicin E2 expression in Escherichia coli biofilms: Induction and regulation revisited

Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays

Ethylene Response of Plum ACC Synthase 1 (ACS1) Promoter is Mediated through the Binding Site of Abscisic Acid Insensitive 5 (ABI5)

Mechanisms of hormonal regulation of endosperm cap‐specific gene expression in tomato seeds

Correlation-Based Network Generation, Visualization, and Analysis as a Powerful Tool in Biological Studies: A Case Study in Cancer Cell Metabolism

The investment in scent: time-resolved metabolic processes in developing volatile-producing Nigella sativa L. seeds

Genome-wide transcription profiling of aerobic and anaerobic Escherichia coli biofilm and planktonic cultures

A Genetic Algorithm to Optimize Weighted Gene Co-Expression Network Analysis

Mass spectrometry-based metabolite profiling reveals functional seasonal shifts in the metabolome of Zygophyllum dumosum Boiss and its relation to environmental conditions

Regional features of northern Italian sparkling wines, identified using solid-phase micro extraction and comprehensive two-dimensional gas chromatography coupled with time-of-flight mass spectrometry

NMR-based leaf metabolic profiling of V. planifolia and three endemic Vanilla species from the Peruvian Amazon

NMR-based metabolic study of fruits of Physalis peruviana L. grown in eight different Peruvian ecosystems

The Alteration of Tomato Chloroplast Vesiculation Positively Affects Whole-Plant Source-Sink Relations and Fruit Metabolism under Stress Conditions

Bet-hedging in bacteriocin producing Escherichia coli populations: the single cell perspective

Hormone balance in a climacteric plum fruit and its non-climacteric bud mutant during ripening

Environmental and genetic effects on tomato seed metabolic balance and its association with germination vigor

Combined correlation‐based network and mQTL analyses efficiently identified loci for branched‐chain amino acid, serine to threonine, and proline metabolism in tomato seeds

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