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Transcriptional interference at tandem lncRNA and protein-coding genes: an emerging theme in regulation of cellular nutrient homeostasis

Nucleic acids research, 2020-09, Vol.48 (15), p.8243

Shuman, Stewart

2020

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DNA Ligases: Progress and Prospects

The Journal of biological chemistry, 2009-06, Vol.284 (26), p.17365-17369

Shuman, Stewart

2009

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RtcB Is the RNA Ligase Component of an Escherichia coli RNA Repair Operon

The Journal of biological chemistry, 2011-03, Vol.286 (10), p.7727-7731

2011

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Characterization of Lhr-Core DNA helicase and manganese- dependent DNA nuclease components of a bacterial gene cluster encoding nucleic acid repair enzymes

The Journal of biological chemistry, 2018-11, Vol.293 (45), p.17491-17504

2018

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Deciphering the RNA Polymerase II CTD Code in Fission Yeast

Molecular cell, 2011-07, Vol.43 (2), p.311-318

2011

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Genetic screen for suppression of transcriptional interference reveals fission yeast 14-3-3 protein Rad24 as an antagonist of precocious Pol2 transcription termination

Nucleic acids research, 2022-01, Vol.50 (2), p.803

2022

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Genetic screen for suppression of transcriptional interference identifies a gain-of-function mutation in Pol2 termination factor Seb1

Proceedings of the National Academy of Sciences - PNAS, 2021-08, Vol.118 (33), p.1

2021

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Mycobacterium smegmatis DinB2 misincorporates deoxyribonucleotides and ribonucleotides during templated synthesis and lesion bypass

Nucleic acids research, 2014-11, Vol.42 (20), p.12722

2014

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Transcription of lncRNA prt, clustered prt RNA sites for Mmi1 binding, and RNA polymerase II CTD phospho-sites govern the repression of pho1 gene expression under phosphate-replete conditions in fission yeast

RNA (Cambridge), 2016-07, Vol.22 (7), p.1011-1025

2016

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Inositol pyrophosphates impact phosphate homeostasis via modulation of RNA 3' processing and transcription termination

Nucleic acids research, 2019-09, Vol.47 (16), p.8452

2019

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RtcB, a Novel RNA Ligase, Can Catalyze tRNA Splicing and HAC1 mRNA Splicing in Vivo

The Journal of biological chemistry, 2011-09, Vol.286 (35), p.30253-30257

2011

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Structure-Function Analysis of STING Activation by c[G(2′,5′)pA(3′,5′)p] and Targeting by Antiviral DMXAA

Cell, 2013-08, Vol.154 (4), p.748-762

2013

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Poly(A) site choice and Pol2 CTD Serine-5 status govern lncRNA control of phosphate-responsive tgp1 gene expression in fission yeast

RNA (Cambridge), 2018-02, Vol.24 (2), p.237-250

2018

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A long noncoding (lnc)RNA governs expression of the phosphate transporter Pho84 in fission yeast and has cascading effects on the flanking prt lncRNA and pho1 genes

The Journal of biological chemistry, 2018-03, Vol.293 (12), p.4456-4467

2018

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RNA Repair: Hiding in Plain Sight

Annual review of genetics, 2023-11, Vol.57, p.461

Shuman, Stewart

2023

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Oligomeric quaternary structure of Escherichia coli and Mycobacterium smegmatis Lhr helicases is nucleated by a novel C-terminal domain composed of five winged-helix modules

Nucleic acids research, 2021-04, Vol.49 (7), p.3876

2021

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Distinctive roles of translesion polymerases DinB1 and DnaE2 in diversification of the mycobacterial genome through substitution and frameshift mutagenesis

Nature communications, 2022-08, Vol.13 (1), p.4493-13, Article 4493

2022

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Modified vaccinia virus Ankara triggers type I IFN production in murine conventional dendritic cells via a cGAS/STING-mediated cytosolic DNA-sensing pathway

PLoS pathogens, 2014-04, Vol.10 (4), p.e1003989-e1003989

2014

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Structure of mycobacterial 3'-to-5' RNA:DNA helicase Lhr bound to a ssDNA tracking strand highlights distinctive features of a novel family of bacterial helicases

Nucleic acids research, 2018-01, Vol.46 (1), p.442

2018

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RNA ligation precedes the retrotransposition of U6/LINE-1 chimeric RNA

Proceedings of the National Academy of Sciences - PNAS, 2019-10, Vol.116 (41), p.20612-20622

2019

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RNA ligase RtcB splices 3'-phosphate and 5'-OH ends via covalent RtcB-(histidinyl)-GMP and polynucleotide-(3')pp(5')G intermediates

Proceedings of the National Academy of Sciences - PNAS, 2012-04, Vol.109 (16), p.6072-6077

2012

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Structure of Fission Yeast Transcription Factor Pho7 Bound to pho1 Promoter DNA and Effect of Pho7 Mutations on DNA Binding and Phosphate Homeostasis

Molecular and cellular biology, 2019-07, Vol.39 (13)

2019

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Novel Mechanism of RNA Repair by RtcB via Sequential 2′,3′-Cyclic Phosphodiesterase and 3′-Phosphate/5′-Hydroxyl Ligation Reactions

The Journal of biological chemistry, 2011-12, Vol.286 (50), p.43134-43143

2011

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RNA polymerase II CTD phospho-sites Ser5 and Ser7 govern phosphate homeostasis in fission yeast

RNA (Cambridge), 2015-10, Vol.21 (10), p.1770-1780

2015

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Structure and two-metal mechanism of a eukaryal nick-sealing RNA ligase

Proceedings of the National Academy of Sciences - PNAS, 2015-11, Vol.112 (45), p.13868-13873

2015

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Transcriptional interference at tandem lncRNA and protein-coding genes: an emerging theme in regulation of cellular nutrient homeostasis

DNA Ligases: Progress and Prospects

RtcB Is the RNA Ligase Component of an Escherichia coli RNA Repair Operon

Characterization of Lhr-Core DNA helicase and manganese- dependent DNA nuclease components of a bacterial gene cluster encoding nucleic acid repair enzymes

Deciphering the RNA Polymerase II CTD Code in Fission Yeast

Genetic screen for suppression of transcriptional interference reveals fission yeast 14-3-3 protein Rad24 as an antagonist of precocious Pol2 transcription termination

Genetic screen for suppression of transcriptional interference identifies a gain-of-function mutation in Pol2 termination factor Seb1

Mycobacterium smegmatis DinB2 misincorporates deoxyribonucleotides and ribonucleotides during templated synthesis and lesion bypass

Transcription of lncRNA prt, clustered prt RNA sites for Mmi1 binding, and RNA polymerase II CTD phospho-sites govern the repression of pho1 gene expression under phosphate-replete conditions in fission yeast

Inositol pyrophosphates impact phosphate homeostasis via modulation of RNA 3' processing and transcription termination

RtcB, a Novel RNA Ligase, Can Catalyze tRNA Splicing and HAC1 mRNA Splicing in Vivo

Structure-Function Analysis of STING Activation by c[G(2′,5′)pA(3′,5′)p] and Targeting by Antiviral DMXAA

Poly(A) site choice and Pol2 CTD Serine-5 status govern lncRNA control of phosphate-responsive tgp1 gene expression in fission yeast

A long noncoding (lnc)RNA governs expression of the phosphate transporter Pho84 in fission yeast and has cascading effects on the flanking prt lncRNA and pho1 genes

RNA Repair: Hiding in Plain Sight

Oligomeric quaternary structure of Escherichia coli and Mycobacterium smegmatis Lhr helicases is nucleated by a novel C-terminal domain composed of five winged-helix modules

Distinctive roles of translesion polymerases DinB1 and DnaE2 in diversification of the mycobacterial genome through substitution and frameshift mutagenesis

Modified vaccinia virus Ankara triggers type I IFN production in murine conventional dendritic cells via a cGAS/STING-mediated cytosolic DNA-sensing pathway

Structure of mycobacterial 3'-to-5' RNA:DNA helicase Lhr bound to a ssDNA tracking strand highlights distinctive features of a novel family of bacterial helicases

RNA ligation precedes the retrotransposition of U6/LINE-1 chimeric RNA

RNA ligase RtcB splices 3'-phosphate and 5'-OH ends via covalent RtcB-(histidinyl)-GMP and polynucleotide-(3')pp(5')G intermediates

Structure of Fission Yeast Transcription Factor Pho7 Bound to pho1 Promoter DNA and Effect of Pho7 Mutations on DNA Binding and Phosphate Homeostasis

Novel Mechanism of RNA Repair by RtcB via Sequential 2′,3′-Cyclic Phosphodiesterase and 3′-Phosphate/5′-Hydroxyl Ligation Reactions

RNA polymerase II CTD phospho-sites Ser5 and Ser7 govern phosphate homeostasis in fission yeast

Structure and two-metal mechanism of a eukaryal nick-sealing RNA ligase

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