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Graph Neural Networks in Cancer and Oncology Research: Emerging and Future Trends

Cancers, 2023-12, Vol.15 (24), p.5858

2023

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Synthetic data generation with probabilistic Bayesian Networks

Mathematical biosciences and engineering : MBE, 2021-10, Vol.18 (6), p.8603-8621

2021

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Dissecting Response to Cancer Immunotherapy by Applying Bayesian Network Analysis to Flow Cytometry Data

International journal of molecular sciences, 2021-02, Vol.22 (5), p.2316

2021

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New Analysis Framework Incorporating Mixed Mutual Information and Scalable Bayesian Networks for Multimodal High Dimensional Genomic and Epigenomic Cancer Data

Frontiers in genetics, 2020-06, Vol.11, p.648-648

2020

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Longitudinal epigenetic and gene expression profiles analyzed by three-component analysis reveal down-regulation of genes involved in protein translation in human aging

Nucleic acids research, 2015-09, Vol.43 (15), p.e100

2015

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Editorial: Systems Biology Methods in Computational Immuno-Oncology

Frontiers in genetics, 2022-04, Vol.13, p.885252-885252

2022

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On origin of genetic code and tRNA before translation

Biology direct, 2011-02, Vol.6 (1), p.14-14

2011

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Enhanced evolution by stochastically variable modification of epigenetic marks in the early embryo

Proceedings of the National Academy of Sciences - PNAS, 2014-04, Vol.111 (17), p.6353-6358

2014

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Bow-tie architectures in biological and artificial neural networks: Implications for network evolution and assay design

iScience, 2023-02, Vol.26 (2), p.106041-106041, Article 106041

2023

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Intrinsic Properties of tRNA Molecules as Deciphered via Bayesian Network and Distribution Divergence Analysis

Life (Basel, Switzerland), 2018-02, Vol.8 (1), p.5

2018

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New Algorithm and Software (BNOmics) for Inferring and Visualizing Bayesian Networks from Heterogeneous Big Biological and Genetic Data

Journal of computational biology, 2017-04, Vol.24 (4), p.340-356

2017

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One ancestor for two codes viewed from the perspective of two complementary modes of tRNA aminoacylation

Biology direct, 2009-01, Vol.4 (1), p.4-4

2009

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Patient generated health data and electronic health record integration in oncologic surgery: A call for artificial intelligence and machine learning

Journal of surgical oncology, 2021-01, Vol.123 (1), p.52-60

2021

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Pharmacogenetic interactions between ABCB1 and SLCO1B1 tagging SNPs and the effectiveness of statins in the prevention of myocardial infarction

Pharmacogenomics, 2010-08, Vol.11 (8), p.1065

2010

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Single-Cell RNA-Seq Mapping of Human Thymopoiesis Reveals Lineage Specification Trajectories and a Commitment Spectrum in T Cell Development

Immunity (Cambridge, Mass.), 2020-06, Vol.52 (6), p.1105-1118.e9

2020

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Dependency Between Protein–Protein Interactions and Protein Variability and Evolutionary Rates in Vertebrates: Observed Relationships and Stochastic Modeling

Journal of molecular evolution, 2019-07, Vol.87 (4-6), p.184-198

2019

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Analysis of high-resolution 3D intrachromosomal interactions aided by Bayesian network modeling

Proceedings of the National Academy of Sciences - PNAS, 2017-11, Vol.114 (48), p.E10359-E10368

2017

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Utilization of model-agnostic explainable artificial intelligence frameworks in oncology: a narrative review

Translational cancer research, 2022-10, Vol.11 (10), p.3853-3868

2022

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Origin of the genetic code: first aminoacyl-tRNA synthetases could replace isofunctional ribozymes when only the second base of codons was established

DNA and cell biology, 2006-06, Vol.25 (6), p.365

2006

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Genomic Association Analysis Suggests Chromosome 12 Locus Influencing Antihypertensive Response to Thiazide Diuretic

Hypertension (Dallas, Tex. 1979), 2008-08, Vol.52 (2), p.359-365

2008

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Concepts and Applications of Information Theory to Immuno-Oncology

Trends in cancer, 2021-04, Vol.7 (4), p.335-346

2021

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Systems biology data analysis methodology in pharmacogenomics

Pharmacogenomics, 2011-09, Vol.12 (9), p.1349

2011

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Mining genetic epidemiology data with Bayesian networks I: Bayesian networks and example application (plasma apoE levels)

Bioinformatics, 2005-08, Vol.21 (15), p.3273-3278

2005

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On Primordial Sense-Antisense Coding

Journal of molecular evolution, 2009-11, Vol.69 (5), p.555-567, Article 555

2009

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Origins and selection of p53 mutations in lung carcinogenesis

Seminars in cancer biology, 2005-04, Vol.15 (2), p.103-112

2005

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Graph Neural Networks in Cancer and Oncology Research: Emerging and Future Trends

Synthetic data generation with probabilistic Bayesian Networks

Dissecting Response to Cancer Immunotherapy by Applying Bayesian Network Analysis to Flow Cytometry Data

New Analysis Framework Incorporating Mixed Mutual Information and Scalable Bayesian Networks for Multimodal High Dimensional Genomic and Epigenomic Cancer Data

Longitudinal epigenetic and gene expression profiles analyzed by three-component analysis reveal down-regulation of genes involved in protein translation in human aging

Editorial: Systems Biology Methods in Computational Immuno-Oncology

On origin of genetic code and tRNA before translation

Enhanced evolution by stochastically variable modification of epigenetic marks in the early embryo

Bow-tie architectures in biological and artificial neural networks: Implications for network evolution and assay design

Intrinsic Properties of tRNA Molecules as Deciphered via Bayesian Network and Distribution Divergence Analysis

New Algorithm and Software (BNOmics) for Inferring and Visualizing Bayesian Networks from Heterogeneous Big Biological and Genetic Data

One ancestor for two codes viewed from the perspective of two complementary modes of tRNA aminoacylation

Patient generated health data and electronic health record integration in oncologic surgery: A call for artificial intelligence and machine learning

Pharmacogenetic interactions between ABCB1 and SLCO1B1 tagging SNPs and the effectiveness of statins in the prevention of myocardial infarction

Single-Cell RNA-Seq Mapping of Human Thymopoiesis Reveals Lineage Specification Trajectories and a Commitment Spectrum in T Cell Development

Dependency Between Protein–Protein Interactions and Protein Variability and Evolutionary Rates in Vertebrates: Observed Relationships and Stochastic Modeling

Analysis of high-resolution 3D intrachromosomal interactions aided by Bayesian network modeling

Utilization of model-agnostic explainable artificial intelligence frameworks in oncology: a narrative review

Origin of the genetic code: first aminoacyl-tRNA synthetases could replace isofunctional ribozymes when only the second base of codons was established

Genomic Association Analysis Suggests Chromosome 12 Locus Influencing Antihypertensive Response to Thiazide Diuretic

Concepts and Applications of Information Theory to Immuno-Oncology

Systems biology data analysis methodology in pharmacogenomics

Mining genetic epidemiology data with Bayesian networks I: Bayesian networks and example application (plasma apoE levels)

On Primordial Sense-Antisense Coding

Origins and selection of p53 mutations in lung carcinogenesis

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