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A Mechanistic Computational Model Reveals That Plasticity of CD4 + T Cell Differentiation Is a Function of Cytokine Composition and Dosage

Frontiers in physiology, 2018-08, Vol.9, p.878-878

2018

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Integrative network analyses of transcriptomics data reveal potential drug targets for acute radiation syndrome

Scientific reports, 2021-03, Vol.11 (1), p.5585-5585, Article 5585

2021

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Author Correction: Integrative network analyses of transcriptomics data reveal potential drug targets for acute radiation syndrome

Scientific reports, 2021-03, Vol.11 (1), p.7057-7057, Article 7057

2021

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Integrative computational approach identifies drug targets in CD4 + T-cell-mediated immune disorders

NPJ systems biology and applications, 2021-01, Vol.7 (1), p.4-4, Article 4

2021

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A computational approach to investigate constitutive activation of NF‐κB

Proteins, structure, function, and bioinformatics, 2022-11, Vol.90 (11), p.1944-1964

2022

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COMO: a pipeline for multi-omics data integration in metabolic modeling and drug discovery

Briefings in bioinformatics, 2023-09, Vol.24 (6)

2023

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De Novo transcriptome sequencing reveals important molecular networks and metabolic pathways of the plant, Chlorophytum borivilianum

PloS one, 2013-12, Vol.8 (12), p.e83336-e83336

2013

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A multiscale mechanistic model of human dendritic cells for in-silico investigation of immune responses and novel therapeutics discovery

Frontiers in immunology, 2023-03, Vol.14, p.1112985-1112985

2023

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A multi-approach and multi-scale platform to model CD4+ T cells responding to infections

PLoS computational biology, 2021-08, Vol.17 (8), p.e1009209-e1009209

2021

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Augusta: From RNA-Seq to gene regulatory networks and Boolean models

Computational and structural biotechnology journal, 2024-12, Vol.23, p.783-790

2024

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T2DiACoD: A Gene Atlas of Type 2 Diabetes Mellitus Associated Complex Disorders

Scientific reports, 2017-07, Vol.7 (1), p.6892-21, Article 6892

2017

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Arginine Catabolism and Polyamine Biosynthesis Pathway Disparities Within Francisella tularensis Subpopulations

Frontiers in microbiology, 2022-06, Vol.13, p.890856-890856

2022

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Transcriptome and machine learning analysis of the impact of COVID-19 on mitochondria and multiorgan damage

PloS one, 2024-01, Vol.19 (1), p.e0297664-e0297664

2024

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Identification of novel adhesins of M. tuberculosis H37Rv using integrated approach of multiple computational algorithms and experimental analysis

PloS one, 2013-07, Vol.8 (7), p.e69790-e69790

2013

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Reconciliation and evolution of Penicillium rubens genome-scale metabolic networks–What about specialised metabolism?

PloS one, 2023-08, Vol.18 (8), p.e0289757-e0289757

2023

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Advancements in computational modelling of biological systems: seventh annual SysMod meeting

Bioinformatics (Oxford, England), 2023-09, Vol.39 (9)

2023

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Differences in Blood-derived Francisella tularensis Type B Strains from Clinical Cases of Tularemia

Microorganisms (Basel), 2020-10, Vol.8 (10), p.1515

2020

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Essential role of systemic iron mobilization and redistribution for adaptive thermogenesis through HIF2-α/hepcidin axis

Proceedings of the National Academy of Sciences - PNAS, 2021-10, Vol.118 (40), p.1

2021

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Combined TLR4 and TLR9 agonists induce distinct phenotypic changes in innate immunity in vitro and in vivo

Cellular immunology, 2020-09, Vol.355, p.104149-104149, Article 104149

2020

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Computational Modeling of Human Fatty Acid Transport Protein 2

The FASEB journal, 2017-04, Vol.31 (S1)

2017

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Integration of Metabolic Modeling with Gene Co-expression Reveals Transcriptionally Programmed Reactions Explaining Robustness in Mycobacterium tuberculosis

Scientific reports, 2016-03, Vol.6 (1), p.23440-23440, Article 23440

2016

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Corrigendum: Integration of Metabolic Modeling with Gene Co-expression Reveals Transcriptionally Programmed Reactions Explaining Robustness in Mycobacterium tuberculosis

Scientific reports, 2016-04, Vol.6, p.24916-24916

2016

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Correction: Corrigendum: Integration of Metabolic Modeling with Gene Co-expression Reveals Transcriptionally Programmed Reactions Explaining Robustness in Mycobacterium tuberculosis

Scientific reports, 2016-04, Vol.6 (1), Article 24916

2016

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An in silico, structural, and biological analysis of lactoferrin of different mammals

International journal of biological macromolecules, 2021-09, Vol.187, p.119-126

2021

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Integrated gene co-expression network analysis in the growth phase of Mycobacterium tuberculosis reveals new potential drug targets

Molecular bioSystems, 2013-11, Vol.9 (11), p.2798-2815

2013

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A Mechanistic Computational Model Reveals That Plasticity of CD4 + T Cell Differentiation Is a Function of Cytokine Composition and Dosage

Integrative network analyses of transcriptomics data reveal potential drug targets for acute radiation syndrome

Author Correction: Integrative network analyses of transcriptomics data reveal potential drug targets for acute radiation syndrome

Integrative computational approach identifies drug targets in CD4 + T-cell-mediated immune disorders

A computational approach to investigate constitutive activation of NF‐κB

COMO: a pipeline for multi-omics data integration in metabolic modeling and drug discovery

De Novo transcriptome sequencing reveals important molecular networks and metabolic pathways of the plant, Chlorophytum borivilianum

A multiscale mechanistic model of human dendritic cells for in-silico investigation of immune responses and novel therapeutics discovery

A multi-approach and multi-scale platform to model CD4+ T cells responding to infections

Augusta: From RNA-Seq to gene regulatory networks and Boolean models

T2DiACoD: A Gene Atlas of Type 2 Diabetes Mellitus Associated Complex Disorders

Arginine Catabolism and Polyamine Biosynthesis Pathway Disparities Within Francisella tularensis Subpopulations

Transcriptome and machine learning analysis of the impact of COVID-19 on mitochondria and multiorgan damage

Identification of novel adhesins of M. tuberculosis H37Rv using integrated approach of multiple computational algorithms and experimental analysis

Reconciliation and evolution of Penicillium rubens genome-scale metabolic networks–What about specialised metabolism?

Advancements in computational modelling of biological systems: seventh annual SysMod meeting

Differences in Blood-derived Francisella tularensis Type B Strains from Clinical Cases of Tularemia

Essential role of systemic iron mobilization and redistribution for adaptive thermogenesis through HIF2-α/hepcidin axis

Combined TLR4 and TLR9 agonists induce distinct phenotypic changes in innate immunity in vitro and in vivo

Computational Modeling of Human Fatty Acid Transport Protein 2

Integration of Metabolic Modeling with Gene Co-expression Reveals Transcriptionally Programmed Reactions Explaining Robustness in Mycobacterium tuberculosis

Corrigendum: Integration of Metabolic Modeling with Gene Co-expression Reveals Transcriptionally Programmed Reactions Explaining Robustness in Mycobacterium tuberculosis

Correction: Corrigendum: Integration of Metabolic Modeling with Gene Co-expression Reveals Transcriptionally Programmed Reactions Explaining Robustness in Mycobacterium tuberculosis

An in silico, structural, and biological analysis of lactoferrin of different mammals

Integrated gene co-expression network analysis in the growth phase of Mycobacterium tuberculosis reveals new potential drug targets

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