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Phosphorylation in Protein-Protein Binding: Effect on Stability and Function

Structure (London), 2011-12, Vol.19 (12), p.1807-1815

2011

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Finding driver mutations in cancer: Elucidating the role of background mutational processes

PLoS computational biology, 2019-04, Vol.15 (4), p.e1006981

2019

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Molecular Mechanisms of Disease-Causing Missense Mutations

Journal of molecular biology, 2013-11, Vol.425 (21), p.3919-3936

2013

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MutaBind estimates and interprets the effects of sequence variants on protein-protein interactions

Nucleic acids research, 2016-07, Vol.44 (W1), p.W494

2016

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Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states

Proceedings of the National Academy of Sciences - PNAS, 2010-11, Vol.107 (47), p.20352-20357

2010

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Histone variant H2A.Z modulates nucleosome dynamics to promote DNA accessibility

Nature communications, 2023-02, Vol.14 (1), p.769-769, Article 769

2023

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DNA methylation cues in nucleosome geometry, stability and unwrapping

Nucleic acids research, 2022-02, Vol.50 (4), p.1864

2022

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Binding of regulatory proteins to nucleosomes is modulated by dynamic histone tails

Nature communications, 2021-09, Vol.12 (1), p.5280-5280, Article 5280

2021

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Deciphering protein-protein interactions. Part I. Experimental techniques and databases

PLoS computational biology, 2007-03, Vol.3 (3), p.e42-e42

2007

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Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners

PLoS computational biology, 2007-04, Vol.3 (4), p.e43-e43

2007

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Physicochemical mechanisms of protein regulation by phosphorylation

Frontiers in genetics, 2014-08, Vol.5, p.270-270

2014

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Crosstalk between Signaling Pathways Provided by Single and Multiple Protein Phosphorylation Sites

Journal of molecular biology, 2015-01, Vol.427 (2), p.511-520

2015

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MutaBind2: Predicting the Impacts of Single and Multiple Mutations on Protein-Protein Interactions

iScience, 2020-03, Vol.23 (3), p.100939-100939, Article 100939

2020

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Computational Approaches to Prioritize Cancer Driver Missense Mutations

International journal of molecular sciences, 2018-07, Vol.19 (7), p.2113

2018

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Cancer missense mutations alter binding properties of proteins and their interaction networks

PloS one, 2013-06, Vol.8 (6), p.e66273

2013

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Nucleosome adaptability conferred by sequence and structural variations in histone H2A–H2B dimers

Current opinion in structural biology, 2015-06, Vol.32, p.48-57

2015

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APOBEC Mutagenesis and Copy-Number Alterations Are Drivers of Proteogenomic Tumor Evolution and Heterogeneity in Metastatic Thoracic Tumors

Cell reports (Cambridge), 2019-03, Vol.26 (10), p.2651-2666.e6

2019

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Structural and functional roles of coevolved sites in proteins

PloS one, 2010-01, Vol.5 (1), p.e8591-e8591

2010

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Detection of new pioneer transcription factors as cell-type-specific nucleosome binders

eLife, 2024-01, Vol.12

2024

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Leveraging Gene Redundancy to Find New Histone Drivers in Cancer

Cancers, 2023-06, Vol.15 (13), p.3437

2023

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DNA polymerase ε and δ variants drive mutagenesis in polypurine tracts in human tumors

Cell reports (Cambridge), 2024-01, Vol.43 (1), p.113655-113655, Article 113655

2024

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Clonal Evolution and Heterogeneity of Osimertinib Acquired Resistance Mechanisms in EGFR Mutant Lung Cancer

Cell reports. Medicine, 2020-04, Vol.1 (1), p.100007, Article 100007

2020

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DNA methylation: Precise modulation of chromatin structure and dynamics

Current opinion in structural biology, 2022-08, Vol.75, p.102430-102430, Article 102430

2022

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A standardized nomenclature for mammalian histone genes

Epigenetics & chromatin, 2022-10, Vol.15 (1), p.1-34, Article 34

2022

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Mutational signatures and mutable motifs in cancer genomes

Briefings in bioinformatics, 2017-05, Vol.19 (6), p.1085-1101

2017

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Phosphorylation in Protein-Protein Binding: Effect on Stability and Function

Finding driver mutations in cancer: Elucidating the role of background mutational processes

Molecular Mechanisms of Disease-Causing Missense Mutations

MutaBind estimates and interprets the effects of sequence variants on protein-protein interactions

Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states

Histone variant H2A.Z modulates nucleosome dynamics to promote DNA accessibility

DNA methylation cues in nucleosome geometry, stability and unwrapping

Binding of regulatory proteins to nucleosomes is modulated by dynamic histone tails

Deciphering protein-protein interactions. Part I. Experimental techniques and databases

Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners

Physicochemical mechanisms of protein regulation by phosphorylation

Crosstalk between Signaling Pathways Provided by Single and Multiple Protein Phosphorylation Sites

MutaBind2: Predicting the Impacts of Single and Multiple Mutations on Protein-Protein Interactions

Computational Approaches to Prioritize Cancer Driver Missense Mutations

Cancer missense mutations alter binding properties of proteins and their interaction networks

Nucleosome adaptability conferred by sequence and structural variations in histone H2A–H2B dimers

APOBEC Mutagenesis and Copy-Number Alterations Are Drivers of Proteogenomic Tumor Evolution and Heterogeneity in Metastatic Thoracic Tumors

Structural and functional roles of coevolved sites in proteins

Detection of new pioneer transcription factors as cell-type-specific nucleosome binders

Leveraging Gene Redundancy to Find New Histone Drivers in Cancer

DNA polymerase ε and δ variants drive mutagenesis in polypurine tracts in human tumors

Clonal Evolution and Heterogeneity of Osimertinib Acquired Resistance Mechanisms in EGFR Mutant Lung Cancer

DNA methylation: Precise modulation of chromatin structure and dynamics

A standardized nomenclature for mammalian histone genes

Mutational signatures and mutable motifs in cancer genomes

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