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Transcriptome analysis of Homo sapiens and Mus musculus reveals mechanisms of CD8+ T cell exhaustion caused by different factors

PloS one, 2022-09, Vol.17 (9), p.e0274494-e0274494

2022

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Transcriptome analysis of Homo sapiens and Mus musculus reveals mechanisms of CD8+ T cell exhaustion caused by different factors

PloS one, 2022-09, Vol.17 (9)

2022

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Molecular Mechanisms of Disease-Causing Missense Mutations

Journal of molecular biology, 2013-11, Vol.425 (21), p.3919-3936

2013

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Phosphorylation in Protein-Protein Binding: Effect on Stability and Function

Structure (London), 2011-12, Vol.19 (12), p.1807-1815

2011

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Multi-Omics Profiling Reveals Phenotypic and Functional Heterogeneity of Neutrophils in COVID-19

International journal of molecular sciences, 2024-04, Vol.25 (7), p.3841

2024

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Single-cell RNA-seq public data reveal the gene regulatory network landscape of respiratory epithelial and peripheral immune cells in COVID-19 patients

Frontiers in immunology, 2023-10, Vol.14, p.1194614-1194614

2023

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Physicochemical mechanisms of protein regulation by phosphorylation

Frontiers in genetics, 2014-08, Vol.5, p.270-270

2014

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Crosstalk between Signaling Pathways Provided by Single and Multiple Protein Phosphorylation Sites

Journal of molecular biology, 2015-01, Vol.427 (2), p.511-520

2015

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New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)

Protein science, 2018-01, Vol.27 (1), p.95-102

2018

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Cancer missense mutations alter binding properties of proteins and their interaction networks

PloS one, 2013-06, Vol.8 (6), p.e66273

2013

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Identification of the sequence determinants of protein N-terminal acetylation through a decision tree approach

BMC bioinformatics, 2017-06, Vol.18 (1), p.289-289, Article 289

2017

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Dynamic recognition and linkage specificity in K63 di-ubiquitin and TAB2 NZF domain complex

Scientific reports, 2018-11, Vol.8 (1), p.16478-13, Article 16478

2018

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Selection of target-binding proteins from the information of weakly enriched phage display libraries by deep sequencing and machine learning

mAbs, 2023, Vol.15 (1), p.2168470-2168470

2023

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Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization

Physical biology, 2011-06, Vol.8 (3), p.035007-035007

2011

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Regulation of protein-protein binding by coupling between phosphorylation and intrinsic disorder: analysis of human protein complexes

Molecular bioSystems, 2013-01, Vol.9 (7), p.1620-1626

2013

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3P267 Structural characteristics of phosphorylation sites on disordered binding regions(20. Origin of life & Evolution,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri, 2014/08/20, Vol.54(supplement1-2), pp.S293

2014

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Structural characterization of single nucleotide variants at ligand binding sites and enzyme active sites of human proteins

Biophysics and Physicobiology, 2016, Vol.13, pp.157-163

2016

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Distribution of single‐nucleotide variants on protein–protein interaction sites and its relationship with minor allele frequency

Protein science, 2016-02, Vol.25 (2), p.316-321

2016

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Structural and Functional Characteristics of Protein Phosphorylation Revealed by Bioinformatic Approaches

Seibutsu Butsuri, 2016, Vol.56(4), pp.207-211

NISHI, Hafumi

2016

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Amino acid substitutions at protein-protein interfaces that modulate the oligomeric state

Proteins, structure, function, and bioinformatics, 2010-05, Vol.78 (6), p.1563-1574

2010

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Application of Next-Generation Sequencing Analysis in the Directed Evolution for Creating Antibody Mimic

Biophysical journal, 2021-02, Vol.120 (3), p.87a-87a

2021

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Cover and spacer insertions: Small nonhydrophobic accessories that assist protein oligomerization

Proteins, structure, function, and bioinformatics, 2011-08, Vol.79 (8), p.2372-2379

2011

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Selective Elimination of NRF2-Activated Cells by Competition With Neighboring Cells in the Esophageal EpitheliumSummary

Cellular and molecular gastroenterology and hepatology, 2023-01, Vol.15 (1), p.153-178

2023

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Selective Elimination of NRF2-Activated Cells by Competition With Neighboring Cells in the Esophageal Epithelium

Cellular and molecular gastroenterology and hepatology, 2023-01, Vol.15 (1), p.153-178

2023

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2P434 Emergence of protein-protein interfaces : Insight from amino acid substitutions(48. Bioinformatics, genomics and proteomics (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri, 2006/10/01, Vol.46(supplement2), pp.S404

2006

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Transcriptome analysis of Homo sapiens and Mus musculus reveals mechanisms of CD8+ T cell exhaustion caused by different factors

Transcriptome analysis of Homo sapiens and Mus musculus reveals mechanisms of CD8+ T cell exhaustion caused by different factors

Molecular Mechanisms of Disease-Causing Missense Mutations

Phosphorylation in Protein-Protein Binding: Effect on Stability and Function

Multi-Omics Profiling Reveals Phenotypic and Functional Heterogeneity of Neutrophils in COVID-19

Single-cell RNA-seq public data reveal the gene regulatory network landscape of respiratory epithelial and peripheral immune cells in COVID-19 patients

Physicochemical mechanisms of protein regulation by phosphorylation

Crosstalk between Signaling Pathways Provided by Single and Multiple Protein Phosphorylation Sites

New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)

Cancer missense mutations alter binding properties of proteins and their interaction networks

Identification of the sequence determinants of protein N-terminal acetylation through a decision tree approach

Dynamic recognition and linkage specificity in K63 di-ubiquitin and TAB2 NZF domain complex

Selection of target-binding proteins from the information of weakly enriched phage display libraries by deep sequencing and machine learning

Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization

Regulation of protein-protein binding by coupling between phosphorylation and intrinsic disorder: analysis of human protein complexes

3P267 Structural characteristics of phosphorylation sites on disordered binding regions(20. Origin of life & Evolution,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Structural characterization of single nucleotide variants at ligand binding sites and enzyme active sites of human proteins

Distribution of single‐nucleotide variants on protein–protein interaction sites and its relationship with minor allele frequency

Structural and Functional Characteristics of Protein Phosphorylation Revealed by Bioinformatic Approaches

Amino acid substitutions at protein-protein interfaces that modulate the oligomeric state

Application of Next-Generation Sequencing Analysis in the Directed Evolution for Creating Antibody Mimic

Cover and spacer insertions: Small nonhydrophobic accessories that assist protein oligomerization

Selective Elimination of NRF2-Activated Cells by Competition With Neighboring Cells in the Esophageal EpitheliumSummary

Selective Elimination of NRF2-Activated Cells by Competition With Neighboring Cells in the Esophageal Epithelium

2P434 Emergence of protein-protein interfaces : Insight from amino acid substitutions(48. Bioinformatics, genomics and proteomics (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

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