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Myosin-independent cytokinesis in Giardia utilizes flagella to coordinate force generation and direct membrane trafficking

Proceedings of the National Academy of Sciences - PNAS, 2017-07, Vol.114 (29), p.E5854-E5863

2017

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Birth/birth-death processes and their computable transition probabilities with biological applications

Journal of mathematical biology, 2018-03, Vol.76 (4), p.911-944

2018

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Estimation for General Birth-Death Processes

Journal of the American Statistical Association, 2014-06, Vol.109 (506), p.730-747

2014

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Quantifying evolutionary constraints on B-cell affinity maturation

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2015-09, Vol.370 (1676)

2015

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Calculating Higher-Order Moments of Phylogenetic Stochastic Mapping Summaries in Linear Time

Journal of computational biology, 2017-05, Vol.24 (5), p.377-399

2017

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Gaussian Process‐Based Bayesian Nonparametric Inference of Population Size Trajectories from Gene Genealogies

Biometrics, 2013-03, Vol.69 (1), p.8-18

2013

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Likelihood-based inference for discretely observed birth-death-shift processes, with applications to evolution of mobile genetic elements

Biometrics, 2015-12, Vol.71 (4), p.1009-1021

2015

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Fitting and interpreting continuous-time latent Markov models for panel data

Statistics in medicine, 2013-11, Vol.32 (26), p.4581-4595

2013

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A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection

Bioinformatics, 2012-12, Vol.28 (24), p.3248-3256

2012

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Optimal experimental design for mathematical models of haematopoiesis

Journal of the Royal Society interface, 2021-01, Vol.18 (174), p.20200729

2021

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Phylogenetic stochastic mapping without matrix exponentiation

Journal of computational biology, 2014-09, Vol.21 (9), p.676-690

2014

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Learning to Count: Robust Estimates for Labeled Distances between Molecular Sequences

Molecular biology and evolution, 2009-04, Vol.26 (4), p.801-814

2009

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joint model for multistate disease processes and random informative observation times, with applications to electronic medical records data

Biometrics, 2015-03, Vol.71 (1), p.90-101

2015

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Heritability estimation of osteoarthritis in the pig-tailed macaque (Macaca nemestrina) with a look toward future data collection

PeerJ (San Francisco, CA), 2014-05, Vol.2, p.e373-e373

2014

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rbrothers: R Package for Bayesian Multiple Change-Point Recombination Detection

Evolutionary Bioinformatics, 2013-01, Vol.2013 (2013), p.235-238

2013

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SURVIVAL ANALYSIS OF DNA MUTATION MOTIFS WITH PENALIZED PROPORTIONAL HAZARDS

The annals of applied statistics, 2019-06, Vol.13 (2), p.1268-1294

2019

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Dual multiple change-point model leads to more accurate recombination detection

Bioinformatics, 2005-07, Vol.21 (13), p.3034-3042

2005

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PREDICTIVE MODELING OF CHOLERA OUTBREAKS IN BANGLADESH

The annals of applied statistics, 2016-06, Vol.10 (2), p.575-595

2016

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Phylogeography of the Trans-Volcanic bunchgrass lizard (Sceloporus bicanthalis) across the highlands of south-eastern Mexico

Biological journal of the Linnean Society, 2013-12, Vol.110 (4), p.852-865

2013

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Measuring microsatellite conservation in mammalian evolution with a phylogenetic birth-death model

Genome biology and evolution, 2012-01, Vol.4 (6), p.636-647

2012

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Accounting for uncertainty in the tree topology has little effect on the decision-theoretic approach to model selection in phylogeny estimation

Molecular biology and evolution, 2005-03, Vol.22 (3), p.691-703

2005

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Phylogenetic Mapping of Recombination Hotspots in Human Immunodeficiency Virus via Spatially Smoothed Change-Point Processes

Genetics (Austin), 2007-04, Vol.175 (4), p.1773-1785

2007

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Synonymous and nonsynonymous distances help untangle convergent evolution and recombination

Statistical applications in genetics and molecular biology, 2015-08, Vol.14 (4), p.375-389

2015

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FITTING BIRTH-DEATH PROCESSES TO PANEL DATA WITH APPLICATIONS TO BACTERIAL DNA FINGERPRINTING

The annals of applied statistics, 2013, Vol.7 (4), p.2315-2335

2013

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Recombination between variants from genital tract and plasma: evolution of multidrug-resistant HIV type 1

AIDS research and human retroviruses, 2012-12, Vol.28 (12), p.1766

2012

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Myosin-independent cytokinesis in Giardia utilizes flagella to coordinate force generation and direct membrane trafficking

Birth/birth-death processes and their computable transition probabilities with biological applications

Estimation for General Birth-Death Processes

Quantifying evolutionary constraints on B-cell affinity maturation

Calculating Higher-Order Moments of Phylogenetic Stochastic Mapping Summaries in Linear Time

Gaussian Process‐Based Bayesian Nonparametric Inference of Population Size Trajectories from Gene Genealogies

Likelihood-based inference for discretely observed birth-death-shift processes, with applications to evolution of mobile genetic elements

Fitting and interpreting continuous-time latent Markov models for panel data

A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection

Optimal experimental design for mathematical models of haematopoiesis

Phylogenetic stochastic mapping without matrix exponentiation

Learning to Count: Robust Estimates for Labeled Distances between Molecular Sequences

joint model for multistate disease processes and random informative observation times, with applications to electronic medical records data

Heritability estimation of osteoarthritis in the pig-tailed macaque (Macaca nemestrina) with a look toward future data collection

rbrothers: R Package for Bayesian Multiple Change-Point Recombination Detection

SURVIVAL ANALYSIS OF DNA MUTATION MOTIFS WITH PENALIZED PROPORTIONAL HAZARDS

Dual multiple change-point model leads to more accurate recombination detection

PREDICTIVE MODELING OF CHOLERA OUTBREAKS IN BANGLADESH

Phylogeography of the Trans-Volcanic bunchgrass lizard (Sceloporus bicanthalis) across the highlands of south-eastern Mexico

Measuring microsatellite conservation in mammalian evolution with a phylogenetic birth-death model

Accounting for uncertainty in the tree topology has little effect on the decision-theoretic approach to model selection in phylogeny estimation

Phylogenetic Mapping of Recombination Hotspots in Human Immunodeficiency Virus via Spatially Smoothed Change-Point Processes

Synonymous and nonsynonymous distances help untangle convergent evolution and recombination

FITTING BIRTH-DEATH PROCESSES TO PANEL DATA WITH APPLICATIONS TO BACTERIAL DNA FINGERPRINTING

Recombination between variants from genital tract and plasma: evolution of multidrug-resistant HIV type 1

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