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Neuronal Transcriptome of Aplysia: Neuronal Compartments and Circuitry

Cell, 2006-12, Vol.127 (7), p.1453-1467

2006

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PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data

Bioinformatics (Oxford, England), 2012-10, Vol.28 (20), p.2691-2692

2012

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Accurate and fast methods to estimate the population mutation rate from error prone sequences

BMC bioinformatics, 2009-08, Vol.10 (1), p.247-247, Article 247

2009

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Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars

BMC bioinformatics, 2011-04, Vol.12 (1), p.103-103, Article 103

2011

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A Likelihood Ratio Test for Evolutionary Rate Shifts and Functional Divergence among Proteins

Proceedings of the National Academy of Sciences - PNAS, 2001-12, Vol.98 (25), p.14512-14517

2001

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RNA interactions in the 5' region of the HIV-1 genome

Journal of molecular biology, 2004-02, Vol.336 (2), p.369-379

2004

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Complete DNA sequence of the mitochondrial genome of the sea-slug, Aplysia californica: Conservation of the gene order in Euthyneura

Molecular phylogenetics and evolution, 2006-02, Vol.38 (2), p.459-469

2006

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Role of the Trans-activation Response Element in Dimerization of HIV-1 RNA

The Journal of biological chemistry, 2004-05, Vol.279 (21), p.22243-22249

2004

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Semiautomated improvement of RNA alignments

RNA (Cambridge), 2007-11, Vol.13 (11), p.1850-1859

2007

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Pfold: RNA secondary structure prediction using stochastic context-free grammars

Nucleic acids research, 2003-07, Vol.31 (13), p.3423

2003

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A computer simulator for assessing different challenges and strategies of de novo sequence assembly

Genes, 2010-09, Vol.1 (2), p.263-282

2010

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Functional divergence of the circadian clock proteins in prokaryotes

Genetica, 2005-07, Vol.124 (2-3), p.247-255

2005

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Evidence for Faster X Chromosome Evolution in Spiders

Molecular biology and evolution, 2019-06, Vol.36 (6), p.1281-1293

2019

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Optimal Multiple Parsimony Alignment with Affine Gap Cost Using a Phylogenetic Tree

Algorithms in Bioinformatics, p.433-446

Knudsen, Bjarne

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Using equilibrium frequencies in models of sequence evolution

BMC evolutionary biology, 2005-03, Vol.5, p.21

2005

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First draft genome sequence of the Japanese eel, Anguilla japonica

Gene, 2012-12, Vol.511 (2), p.195-201

2012

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Assembly and structural analysis of a covalently closed nano-scale DNA cage

Nucleic acids research, 2008-03, Vol.36 (4), p.1113

2008

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Structure of Nanoscale Truncated Octahedral DNA Cages: Variation of Single-Stranded Linker Regions and Influence on Assembly Yields

ACS nano, 2010-03, Vol.4 (3), p.1367-1376

2010

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Abstract 2227: An automatic pipeline to find and annotate rare subclonal somatic variants in a paired tumor/normal sample

Cancer research (Chicago, Ill.), 2014-10, Vol.74 (19_Supplement), p.2227-2227

2014

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Abstract 4181: Accurate and fast detection and comparison of larger clinically relevant insertions and deletions

Cancer research (Chicago, Ill.), 2014-10, Vol.74 (19_Supplement), p.4181-4181

2014

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Abstract 5332: Comparison of variant calling from whole exome and transcriptome sequencing using CLC Cancer Research Workbench

Cancer research (Chicago, Ill.), 2014-10, Vol.74 (19_Supplement), p.5332-5332

2014

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Abstract 2334: Identification of differentially expressed genes and somatic mutations in esophageal adenocarinoma cancer patients

Cancer research (Chicago, Ill.), 2014-10, Vol.74 (19_Supplement), p.2334-2334

2014

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Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools

BMC genomics, 2014-06, Vol.15 (1), p.439-439, Article 439

2014

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Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue

Draft genome sequence of the rubber tree Hevea brasiliensis

Neuronal Transcriptome of Aplysia: Neuronal Compartments and Circuitry

PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data

Accurate and fast methods to estimate the population mutation rate from error prone sequences

Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars

A Likelihood Ratio Test for Evolutionary Rate Shifts and Functional Divergence among Proteins

RNA interactions in the 5' region of the HIV-1 genome

Complete DNA sequence of the mitochondrial genome of the sea-slug, Aplysia californica: Conservation of the gene order in Euthyneura

Role of the Trans-activation Response Element in Dimerization of HIV-1 RNA

Semiautomated improvement of RNA alignments

Pfold: RNA secondary structure prediction using stochastic context-free grammars

A computer simulator for assessing different challenges and strategies of de novo sequence assembly

Functional divergence of the circadian clock proteins in prokaryotes

Evidence for Faster X Chromosome Evolution in Spiders

Optimal Multiple Parsimony Alignment with Affine Gap Cost Using a Phylogenetic Tree

Using equilibrium frequencies in models of sequence evolution

First draft genome sequence of the Japanese eel, Anguilla japonica

Assembly and structural analysis of a covalently closed nano-scale DNA cage

Structure of Nanoscale Truncated Octahedral DNA Cages: Variation of Single-Stranded Linker Regions and Influence on Assembly Yields

Abstract 2227: An automatic pipeline to find and annotate rare subclonal somatic variants in a paired tumor/normal sample

Abstract 4181: Accurate and fast detection and comparison of larger clinically relevant insertions and deletions

Abstract 5332: Comparison of variant calling from whole exome and transcriptome sequencing using CLC Cancer Research Workbench

Abstract 2334: Identification of differentially expressed genes and somatic mutations in esophageal adenocarinoma cancer patients

Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools

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