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SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

BMC bioinformatics, 2014-06, Vol.15 (1), p.211-211, Article 211

2014

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Scaffolding pre-assembled contigs using SSPACE

Bioinformatics (Oxford, England), 2011-02, Vol.27 (4), p.578-579

2011

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king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system

Proceedings of the National Academy of Sciences - PNAS, 2013-12, Vol.110 (51), p.20651-20656

2013

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Comparative transcriptomics reveals commonalities and differences in the genetic underpinnings of a floral dimorphism

Scientific reports, 2022-12, Vol.12 (1), p.20771-20771, Article 20771

2022

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A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha

The Plant journal : for cell and molecular biology, 2020-03, Vol.101 (6), p.1378-1396

2020

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Toward almost closed genomes with GapFiller

Genome biology, 2012-06, Vol.13 (6), p.R56-R56

2012

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A Short Indel-Lacking-Resistance Gene Triggers Silencing of the Photosynthetic Machinery Components Through TYLCSV-Associated Endogenous siRNAs in Tomato

Frontiers in plant science, 2018-10, Vol.9, p.1470-1470

2018

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Spread of Carbapenem Resistance by Transposition and Conjugation Among Pseudomonas aeruginosa

Frontiers in microbiology, 2018-09, Vol.9, p.2057-2057

2018

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On the Role of Bioinformatics and Data Science in Industrial Microbiome Applications

Frontiers in genetics, 2019-08, Vol.10, p.721-721

2019

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Development of a reproducible small intestinal microbiota model and its integration into the SHIME ® -system, a dynamic in vitro gut model

Frontiers in microbiology, 2023-03, Vol.13, p.1054061-1054061

2023

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Homeologs of the Nicotiana benthamiana Antiviral ARGONAUTE1 Show Different Susceptibilities to microRNA168-Mediated Control

Plant physiology (Bethesda), 2015-07, Vol.168 (3), p.938-952

2015

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Bioinformatics approaches for viral metagenomics in plants using short RNAs: model case of study and application to a Cicer arietinum population

Frontiers in microbiology, 2015-01, Vol.5, p.790-790

2015

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The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina next generation sequencing

BMC genomics, 2012-03, Vol.13 (1), p.114-114

2012

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Multiomics characterisation of the zoo-housed gorilla gut microbiome reveals bacterial community compositions shifts, fungal cellulose-degrading, and archaeal methanogenic activity

Gut microbiome (Cambridge, England), 2023, Vol.4, Article e12

2023

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Genotyping by sequencing for estimating relative abundances of diatom taxa in mock communities

BMC ecology and evolution, 2023-02, Vol.23 (1), p.4-4, Article 4

2023

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The meaning of alignment: lessons from structural diversity

BMC bioinformatics, 2008-12, Vol.9 (1), p.556-556, Article 556

2008

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Protein secondary structure prediction

Methods in molecular biology (Clifton, N.J.), 2010, Vol.609, p.327

2010

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CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations

BMC genomics, 2009-08, Vol.10 (1), p.401-401, Article 401

2009

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Comparative Genomics Elucidates the Origin of a Supergene Controlling Floral Heteromorphism

Molecular biology and evolution, 2022-02, Vol.39 (2)

2022

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Structure and function analysis of flexible alignment regions in proteins

BMC bioinformatics, 2009-10, Vol.10 (S13), p.P6-P6, Article P6

2009

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Multiple Sequence Alignment

Methods in molecular biology (Clifton, N.J.), 2017, Vol.1525, p.167

2017

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PRALINE™: a strategy for improved multiple alignment of transmembrane proteins

Bioinformatics, 2008-02, Vol.24 (4), p.492-497

2008

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The butyrate-producing and spore-forming bacterial genus Coprococcus as a potential biomarker for neurological disorders

Gut microbiome (Cambridge, England), 2023, Vol.4, Article e16

2023

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Phylotranscriptomics reveals the reticulate evolutionary history of a widespread diatom species complex

Journal of phycology, 2022-10, Vol.58 (5), p.643-656

2022

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Shannon Entropy to Evaluate Substitution Rate Variation Among Viral Nucleotide Positions in Datasets of Viral siRNAs

Methods in molecular biology (Clifton, N.J.), 2018-01, Vol.1746, p.187

2018

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SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

Scaffolding pre-assembled contigs using SSPACE

king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system

Comparative transcriptomics reveals commonalities and differences in the genetic underpinnings of a floral dimorphism

A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha

Toward almost closed genomes with GapFiller

A Short Indel-Lacking-Resistance Gene Triggers Silencing of the Photosynthetic Machinery Components Through TYLCSV-Associated Endogenous siRNAs in Tomato

Spread of Carbapenem Resistance by Transposition and Conjugation Among Pseudomonas aeruginosa

On the Role of Bioinformatics and Data Science in Industrial Microbiome Applications

Development of a reproducible small intestinal microbiota model and its integration into the SHIME ® -system, a dynamic in vitro gut model

Homeologs of the Nicotiana benthamiana Antiviral ARGONAUTE1 Show Different Susceptibilities to microRNA168-Mediated Control

Bioinformatics approaches for viral metagenomics in plants using short RNAs: model case of study and application to a Cicer arietinum population

The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina next generation sequencing

Multiomics characterisation of the zoo-housed gorilla gut microbiome reveals bacterial community compositions shifts, fungal cellulose-degrading, and archaeal methanogenic activity

Genotyping by sequencing for estimating relative abundances of diatom taxa in mock communities

The meaning of alignment: lessons from structural diversity

Protein secondary structure prediction

CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations

Comparative Genomics Elucidates the Origin of a Supergene Controlling Floral Heteromorphism

Structure and function analysis of flexible alignment regions in proteins

Multiple Sequence Alignment

PRALINE™: a strategy for improved multiple alignment of transmembrane proteins

The butyrate-producing and spore-forming bacterial genus Coprococcus as a potential biomarker for neurological disorders

Phylotranscriptomics reveals the reticulate evolutionary history of a widespread diatom species complex

Shannon Entropy to Evaluate Substitution Rate Variation Among Viral Nucleotide Positions in Datasets of Viral siRNAs

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