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Variable G protein determinants of GPCR coupling selectivity

Proceedings of the National Academy of Sciences - PNAS, 2019-06, Vol.116 (24), p.12054-12059

2019

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Prediction of Conformation Specific Thermostabilizing Mutations for Class A G Protein-Coupled Receptors

Journal of chemical information and modeling, 2019-09, Vol.59 (9), p.3744-3754

2019

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Dynamic spatiotemporal determinants modulate GPCR:G protein coupling selectivity and promiscuity

Nature communications, 2022-12, Vol.13 (1), p.7428-7428, Article 7428

2022

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Structural instability and divergence from conserved residues underlie intracellular retention of mammalian odorant receptors

Proceedings of the National Academy of Sciences - PNAS, 2020-02, Vol.117 (6), p.2957-2967

2020

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Unzipping of Double-Stranded Ribonucleic Acids by Graphene and Single-Walled Carbon Nanotube: Helix Geometry versus Surface Curvature

Journal of physical chemistry. C, 2016-10, Vol.120 (39), p.22681-22693

2016

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Spontaneous Unzipping of Xylonucleic Acid Assisted by a Single-Walled Carbon Nanotube: A Computational Study

The journal of physical chemistry. B, 2016-04, Vol.120 (15), p.3642-3652

2016

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Probing the Salt Concentration Dependent Nucelobase Distribution in a Single-Stranded DNA-Single-Walled Carbon Nanotube Hybrid with Molecular Dynamics

The journal of physical chemistry. B, 2016-01, Vol.120 (3), p.455-466

2016

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Molecular dynamics simulation elucidates the preferential binding affinity of sodium and tetramethylammonium ions for tetrameric Nafion unit under aqueous conditions

RSC advances, 2016-01, Vol.6 (100), p.97961-97968

2016

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How Do Branched Detergents Stabilize GPCRs in Micelles?

Biochemistry (Easton), 2020-06, Vol.59 (23), p.2125-2134

2020

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Ammonium based stabilizers effectively counteract urea-induced denaturation in a small protein: insights from molecular dynamics simulations

RSC advances, 2017, Vol.7 (83), p.52888-52906

2017

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Can an ammonium-based room temperature ionic liquid counteract the urea-induced denaturation of a small peptide?

Physical chemistry chemical physics : PCCP, 2017, Vol.19 (11), p.7772-7787

2017

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Ion assisted structural collapse of a single stranded DNA: A molecular dynamics approach

Chemical physics, 2015-09, Vol.459, p.137-147

2015

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Salt Induced Structural Collapse, Swelling, and Signature of Aggregation of Two ssDNA Strands: Insights from Molecular Dynamics Simulation

The journal of physical chemistry. B, 2019-01, Vol.123 (1), p.47-56

2019

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Prediction of Conformation Specific Thermostabilizing Mutations for Class A GPCRs

Journal of chemical information and modeling, 2019-08, Vol.59 (9), p.3744-3754

2019

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Sequence coevolution and structure stabilization modulate olfactory receptor expression

Biophysical journal, 2022-03, Vol.121 (5), p.830-840

2022

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Correction to “Probing the Salt Concentration Dependent Nucleobase Distribution in a Single-Stranded DNA–Single-Walled Carbon Nanotube Hybrid with Molecular Dynamics”

The journal of physical chemistry. B, 2016-03, Vol.120 (10), p.2868-2868

2016

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Probing the Salt Concentration Dependent Nucleobase Distribution in a Single-Stranded DNA–Single-Walled Carbon Nanotube Hybrid with Molecular Dynamics

The journal of physical chemistry. B, 2016-01, Vol.120 (3), p.455-466

2016

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Can an ammonium-based room temperature ionic liquid counteract the urea-induced denaturation of a small peptide?Electronic supplementary information (ESI) available: Geometry optimized structures of the two ionic species comprising TEAA with suitable atomic labels, partial charges assigned for each ion, details of TEAA force-field parameters in tabular formats, brief overview of each of the simulated system, time evolution of the interaction energy corresponding to urea and TEAA, hydrogen bond r

2017-03

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A universal allosteric mechanism for G protein activation

Molecular cell, 2021-04, Vol.81 (7), p.1384-1396.e6

2021

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Azadirachtin inhibits amyloid formation, disaggregates pre-formed fibrils and protects pancreatic β-cells from human islet amyloid polypeptide/amylin-induced cytotoxicity

Biochemical journal, 2019-03, Vol.476 (5), p.889-907

2019

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Thermodynamics of site-specific small molecular ion interactions with DNA duplex: a molecular dynamics study

Molecular simulation, 2016-06, Vol.42 (9), p.715-724

2016

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Machine Learning for Prioritization of Thermostabilizing Mutations for G-Protein Coupled Receptors

Biophysical journal, 2019-12, Vol.117 (11), p.2228-2239

2019

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Engineering Salt Bridge Networks between Transmembrane Helices Confers Thermostability in G‑Protein-Coupled Receptors

Journal of chemical theory and computation, 2018-12, Vol.14 (12), p.6574-6585

2018

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Catalytic site mutations confer multiple states of G protein activation

Science signaling, 2023-02, Vol.16 (772), p.eabq7842

2023

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Ammonium based stabilizers effectively counteract urea-induced denaturation in a small protein: insights from molecular dynamics simulationsElectronic supplementary information (ESI) available. See DOI: 10.1039/c7ra10712a

2017-11

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Variable G protein determinants of GPCR coupling selectivity

Prediction of Conformation Specific Thermostabilizing Mutations for Class A G Protein-Coupled Receptors

Dynamic spatiotemporal determinants modulate GPCR:G protein coupling selectivity and promiscuity

Structural instability and divergence from conserved residues underlie intracellular retention of mammalian odorant receptors

Unzipping of Double-Stranded Ribonucleic Acids by Graphene and Single-Walled Carbon Nanotube: Helix Geometry versus Surface Curvature

Spontaneous Unzipping of Xylonucleic Acid Assisted by a Single-Walled Carbon Nanotube: A Computational Study

Probing the Salt Concentration Dependent Nucelobase Distribution in a Single-Stranded DNA-Single-Walled Carbon Nanotube Hybrid with Molecular Dynamics

Molecular dynamics simulation elucidates the preferential binding affinity of sodium and tetramethylammonium ions for tetrameric Nafion unit under aqueous conditions

How Do Branched Detergents Stabilize GPCRs in Micelles?

Ammonium based stabilizers effectively counteract urea-induced denaturation in a small protein: insights from molecular dynamics simulations

Can an ammonium-based room temperature ionic liquid counteract the urea-induced denaturation of a small peptide?

Ion assisted structural collapse of a single stranded DNA: A molecular dynamics approach

Salt Induced Structural Collapse, Swelling, and Signature of Aggregation of Two ssDNA Strands: Insights from Molecular Dynamics Simulation

Prediction of Conformation Specific Thermostabilizing Mutations for Class A GPCRs

Sequence coevolution and structure stabilization modulate olfactory receptor expression

Correction to “Probing the Salt Concentration Dependent Nucleobase Distribution in a Single-Stranded DNA–Single-Walled Carbon Nanotube Hybrid with Molecular Dynamics”

Probing the Salt Concentration Dependent Nucleobase Distribution in a Single-Stranded DNA–Single-Walled Carbon Nanotube Hybrid with Molecular Dynamics

A universal allosteric mechanism for G protein activation

Azadirachtin inhibits amyloid formation, disaggregates pre-formed fibrils and protects pancreatic β-cells from human islet amyloid polypeptide/amylin-induced cytotoxicity

Thermodynamics of site-specific small molecular ion interactions with DNA duplex: a molecular dynamics study

Machine Learning for Prioritization of Thermostabilizing Mutations for G-Protein Coupled Receptors

Engineering Salt Bridge Networks between Transmembrane Helices Confers Thermostability in G‑Protein-Coupled Receptors

Catalytic site mutations confer multiple states of G protein activation

Ammonium based stabilizers effectively counteract urea-induced denaturation in a small protein: insights from molecular dynamics simulationsElectronic supplementary information (ESI) available. See DOI: 10.1039/c7ra10712a

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