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HiGlass: web-based visual exploration and analysis of genome interaction maps

Genome Biology, 2018-08, Vol.19 (1), p.125-125, Article 125

2018

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Viv: multiscale visualization of high-resolution multiplexed bioimaging data on the web

Nature methods, 2022-05, Vol.19 (5), p.515-516

2022

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Diverse Mechanisms of Somatic Structural Variations in Human Cancer Genomes

Cell, 2013-05, Vol.153 (4), p.919-929

2013

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Guidelines for reporting single-cell RNA-seq experiments

Nature biotechnology, 2020-12, Vol.38 (12), p.1384-1386

2020

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The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

Nature communications, 2022-05, Vol.13 (1), p.2365-11, Article 2365

2022

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Interactive visual exploration and refinement of cluster assignments

BMC bioinformatics, 2017-09, Vol.18 (1), p.406-406, Article 406

2017

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Alerts and Collections for Automating Patients’ Sensemaking and Organizing of Their Electronic Health Record Data for Reflection, Planning, and Clinical Visits: Qualitative Research-Through-Design Study

JMIR human factors, 2023-08, Vol.10, p.e41552-e41552

2023

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MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data

Genome Biology, 2024-08, Vol.25 (1), p.1-15, Article 205

2024

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New Ways for Patients to Make Sense of Their Electronic Health Record Data Using the Discovery Web Application: Think-Aloud Evaluation Study

JMIR formative research, 2023-04, Vol.7, p.e41346-e41346

2023

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UpSetR: an R package for the visualization of intersecting sets and their properties

Bioinformatics (Oxford, England), 2017-09, Vol.33 (18), p.2938-2940

2017

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An Integrated, Directed Mass Spectrometric Approach for In-depth Characterization of Complex Peptide Mixtures

Molecular & cellular proteomics, 2008-11, Vol.7 (11), p.2138-2150

2008

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Author Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

Nature communications, 2022-11, Vol.13 (1), p.6561-6561, Article 6561

2022

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Effective Communication of Personalized Risks and Patient Preferences During Surgical Informed Consent Using Data Visualization: Qualitative Semistructured Interview Study With Patients After Surgery

JMIR human factors, 2022-04, Vol.9 (2), p.e29118-e29118

2022

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Heat maps

Nature methods, 2012-03, Vol.9 (3), p.213-213

2012

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Sets and intersections

Nature methods, 2014-07, Vol.11 (8), p.779-779

2014

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SATORI: a system for ontology-guided visual exploration of biomedical data repositories

Bioinformatics, 2018-04, Vol.34 (7), p.1200-1207

2018

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Nozzle: a report generation toolkit for data analysis pipelines

Bioinformatics, 2013-04, Vol.29 (8), p.1089-1091

2013

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A General Framework for Comparing Embedding Visualizations Across Class-Label Hierarchies

IEEE transactions on visualization and computer graphics, 2024-09, Vol.PP, p.1-11

2024

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Gos: a declarative library for interactive genomics visualization in Python

Bioinformatics (Oxford, England), 2023-01, Vol.39 (1)

2023

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Points of view: Mapping quantitative data to color

Nature methods, 2012-08, Vol.9 (8), p.769

2012

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Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator

PLoS computational biology, 2013-01, Vol.9 (1), p.e1002834

2013

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Mapping quantitative data to color

Nature methods, 2012-08, Vol.9 (8), p.769-769

2012

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Temporal data

Nature methods, 2015-02, Vol.12 (2), p.97-97

2015

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Response to "Plotting intersections" by Lentini

Nature methods, 2015-04, Vol.12 (4), p.281-281

2015

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Making Tools that People Will Use: User-Centered Design in Computational Biology Research

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2021, Vol.26, p.346

2021

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HiGlass: web-based visual exploration and analysis of genome interaction maps

Viv: multiscale visualization of high-resolution multiplexed bioimaging data on the web

Diverse Mechanisms of Somatic Structural Variations in Human Cancer Genomes

Guidelines for reporting single-cell RNA-seq experiments

The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

Interactive visual exploration and refinement of cluster assignments

Alerts and Collections for Automating Patients’ Sensemaking and Organizing of Their Electronic Health Record Data for Reflection, Planning, and Clinical Visits: Qualitative Research-Through-Design Study

MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data

New Ways for Patients to Make Sense of Their Electronic Health Record Data Using the Discovery Web Application: Think-Aloud Evaluation Study

UpSetR: an R package for the visualization of intersecting sets and their properties

An Integrated, Directed Mass Spectrometric Approach for In-depth Characterization of Complex Peptide Mixtures

Author Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

Effective Communication of Personalized Risks and Patient Preferences During Surgical Informed Consent Using Data Visualization: Qualitative Semistructured Interview Study With Patients After Surgery

Heat maps

Sets and intersections

SATORI: a system for ontology-guided visual exploration of biomedical data repositories

Nozzle: a report generation toolkit for data analysis pipelines

A General Framework for Comparing Embedding Visualizations Across Class-Label Hierarchies

Gos: a declarative library for interactive genomics visualization in Python

Points of view: Mapping quantitative data to color

Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator

Mapping quantitative data to color

Temporal data

Response to "Plotting intersections" by Lentini

Making Tools that People Will Use: User-Centered Design in Computational Biology Research

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