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practical guide to environmental association analysis in landscape genomics

Molecular ecology, 2015-09, Vol.24 (17), p.4348-4370

2015

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Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae)

Genetics (Austin), 2010-07, Vol.185 (3), p.969-982

2010

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Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae)

Molecular ecology, 2010-09, Vol.19 (17), p.3789-3805

2010

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Polygenic adaptation and negative selection across traits, years and environments in a long‐lived plant species (Pinus pinaster Ait., Pinaceae)

Molecular ecology, 2022-04, Vol.31 (7), p.2089-2105

2022

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Association Genetics of Coastal Douglas Fir (Pseudotsuga menziesii var. menziesii, Pinaceae). I. Cold-Hardiness Related Traits

Genetics (Austin), 2009-08, Vol.182 (4), p.1289-1302

2009

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Phylogeny, historical biogeography, and patterns of diversification for Pinus (Pinaceae): Phylogenetic tests of fossil-based hypotheses

Molecular phylogenetics and evolution, 2006-07, Vol.40 (1), p.166-182

2006

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RADseq approaches and applications for forest tree genetics

Tree genetics & genomes, 2018-06, Vol.14 (3), p.1-25, Article 39

2018

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Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem

The New phytologist, 2010-10, Vol.188 (2), p.515-532

2010

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High rate of adaptive evolution in two widespread European pines

Molecular ecology, 2017-12, Vol.26 (24), p.6857-6870

2017

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molecular phylogeny and classification of Bignoniaceae

American journal of botany, 2009-09, Vol.96 (9), p.1731-1743

2009

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Single-Locus versus Multilocus Patterns of Local Adaptation to Climate in Eastern White Pine (Pinus strobus, Pinaceae)

PloS one, 2016-07, Vol.11 (7), p.e0158691-e0158691

2016

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Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome

The New phytologist, 2012-03, Vol.193 (4), p.890-902

2012

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Tracing the footprints of a moving hybrid zone under a demographic history of speciation with gene flow

Evolutionary applications, 2020-01, Vol.13 (1), p.195-209

2020

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Genotyping‐by‐sequencing and ecological niche modeling illuminate phylogeography, admixture, and Pleistocene range dynamics in quaking aspen (Populus tremuloides)

Ecology and evolution, 2020-06, Vol.10 (11), p.4609-4629

2020

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Multilocus Patterns of Nucleotide Diversity and Divergence Reveal Positive Selection at Candidate Genes Related to Cold Hardiness in Coastal Douglas Fir (Pseudotsuga menziesii var. menziesii)

Genetics (Austin), 2009-09, Vol.183 (1), p.289-298

2009

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Probing the dark matter of environmental associations yields novel insights into the architecture of adaptation

The New phytologist, 2023-03, Vol.237 (5), p.1479-1482

2023

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High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.)

Tree genetics & genomes, 2009-01, Vol.5 (1), p.225-234

2009

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Adaptive evolution in a conifer hybrid zone is driven by a mosaic of recently introgressed and background genetic variants

Communications biology, 2021-02, Vol.4 (1), p.160-160, Article 160

2021

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Contrasting patterns of nucleotide diversity for four conifers of Alpine European forests

Evolutionary applications, 2012-11, Vol.5 (7), p.762-775

2012

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phylogeographical analysis of the range disjunction for foxtail pine (Pinus balfouriana, Pinaceae): the role of Pleistocene glaciation

Molecular ecology, 2008-04, Vol.17 (8), p.1983-1997

2008

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Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow

Molecular phylogenetics and evolution, 2008-12, Vol.49 (3), p.832-842

2008

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The Molecular Systematics of Rhododendron (Ericaceae): A Phylogeny Based Upon RPB2 Gene Sequences

Systematic botany, 2005-07, Vol.30 (3), p.616-626

2005

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The genetic architecture of local adaptation I: the genomic landscape of foxtail pine (Pinus balfouriana Grev. & Balf.) as revealed from a high-density linkage map

Tree genetics & genomes, 2015-06, Vol.11 (3), p.1-15, Article 49

2015

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The genomics of local adaptation in trees: are we out of the woods yet?

Tree genetics & genomes, 2018-04, Vol.14 (2), p.1-30, Article 29

2018

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Determining the when, where and how of conifer speciation: a challenge arising from the study 'Evolutionary history of a relict conifer Pseudotaxus chienii'

Annals of botany, 2020-01, Vol.125 (1), p.v-vii

2020

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practical guide to environmental association analysis in landscape genomics

Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae)

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae)

Polygenic adaptation and negative selection across traits, years and environments in a long‐lived plant species (Pinus pinaster Ait., Pinaceae)

Association Genetics of Coastal Douglas Fir (Pseudotsuga menziesii var. menziesii, Pinaceae). I. Cold-Hardiness Related Traits

Phylogeny, historical biogeography, and patterns of diversification for Pinus (Pinaceae): Phylogenetic tests of fossil-based hypotheses

RADseq approaches and applications for forest tree genetics

Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem

High rate of adaptive evolution in two widespread European pines

molecular phylogeny and classification of Bignoniaceae

Single-Locus versus Multilocus Patterns of Local Adaptation to Climate in Eastern White Pine (Pinus strobus, Pinaceae)

Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome

Tracing the footprints of a moving hybrid zone under a demographic history of speciation with gene flow

Genotyping‐by‐sequencing and ecological niche modeling illuminate phylogeography, admixture, and Pleistocene range dynamics in quaking aspen (Populus tremuloides)

Multilocus Patterns of Nucleotide Diversity and Divergence Reveal Positive Selection at Candidate Genes Related to Cold Hardiness in Coastal Douglas Fir (Pseudotsuga menziesii var. menziesii)

Probing the dark matter of environmental associations yields novel insights into the architecture of adaptation

High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.)

Adaptive evolution in a conifer hybrid zone is driven by a mosaic of recently introgressed and background genetic variants

Contrasting patterns of nucleotide diversity for four conifers of Alpine European forests

phylogeographical analysis of the range disjunction for foxtail pine (Pinus balfouriana, Pinaceae): the role of Pleistocene glaciation

Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow

The Molecular Systematics of Rhododendron (Ericaceae): A Phylogeny Based Upon RPB2 Gene Sequences

The genetic architecture of local adaptation I: the genomic landscape of foxtail pine (Pinus balfouriana Grev. & Balf.) as revealed from a high-density linkage map

The genomics of local adaptation in trees: are we out of the woods yet?

Determining the when, where and how of conifer speciation: a challenge arising from the study 'Evolutionary history of a relict conifer Pseudotaxus chienii'

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