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Human subtilase SKI-1/S1P is a master regulator of the HCV Lifecycle and a potential host cell target for developing indirect-acting antiviral agents

PLoS pathogens, 2012-01, Vol.8 (1), p.e1002468-e1002468

2012

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Spectroscopic and Molecular Dynamics Evidence for a Sequential Mechanism for the A-to-B Transition in DNA

Biophysical journal, 2008-07, Vol.95 (1), p.257-272

2008

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Improving biophysical properties of a bispecific antibody scaffold to aid developability: quality by molecular design

mAbs, 2013-09, Vol.5 (5), p.646-654

2013

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Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. II: Sequence Context Effects on the Dynamical Structures of the 10 Unique Dinucleotide Steps

Biophysical journal, 2005-12, Vol.89 (6), p.3721-3740

2005

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Protein engineering and the use of molecular modeling and simulation: The case of heterodimeric Fc engineering

Methods (San Diego, Calif.), 2014-01, Vol.65 (1), p.77-94

2014

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Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. I. Research Design and Results on d(C pG) Steps

Biophysical journal, 2004-12, Vol.87 (6), p.3799-3813

2004

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Studies of base pair sequence effects on DNA solvation based on all-atom molecular dynamics simulations

Journal of biosciences, 2012-07, Vol.37 (3), p.399-421

2012

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LC-MS characterization and purity assessment of a prototype bispecific antibody

mAbs, 2013-09, Vol.5 (5), p.711-722

2013

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Can Absolute Free Energies of Association Be Estimated from Molecular Mechanical Simulations? The Biotin−Streptavidin System Revisited

The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory, 2001-10, Vol.105 (42), p.9795-9799

2001

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Prokaryotic Gene Finding Based on Physicochemical Characteristics of Codons Calculated from Molecular Dynamics Simulations

Biophysical journal, 2008-06, Vol.94 (11), p.4173-4183

2008

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Can free energy calculations be fast and accurate at the same time? Binding of low-affinity, non-peptide inhibitors to the SH2 domain of the src protein

Journal of computer-aided molecular design, 2005-11, Vol.19 (11), p.765-770

2005

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Structural bioinformatics of DNA: a web-based tool for the analysis of molecular dynamics results and structure prediction

Bioinformatics, 2006-04, Vol.22 (8), p.1007-1009

2006

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Root Mean Square Deviation Probability Analysis of Molecular Dynamics Trajectories on DNA

Journal of chemical information and modeling, 2006-05, Vol.46 (3), p.1084-1093

2006

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Molecular dynamics simulations of DNA curvature and flexibility: Helix phasing and premelting

Biopolymers, 2004-02, Vol.73 (3), p.380-403

2004

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Free Energy Analysis of Protein–DNA Binding: The EcoRI Endonuclease–DNA Complex

Journal of computational physics, 1999-05, Vol.151 (1), p.333-357

1999

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Induced Fit and the Entropy of Structural Adaptation in the Complexation of CAP and λ-Repressor with Cognate DNA Sequences

Biophysical journal, 2005-05, Vol.88 (5), p.3147-3157

2005

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Axis Curvature and Ligand Induced Bending in the CAP-DNA Oligomers

Biophysical journal, 2005-01, Vol.88 (1), p.L04-L06

2005

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Structure and axis curvature in two dA6·dT6 DNA oligonucleotides: Comparison of molecular dynamics simulations with results from crystallography and NMR spectroscopy

Biopolymers, 2004-12, Vol.75 (6), p.468-479

2004

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CTL Recognition of a Protective Immunodominant Influenza A Virus Nucleoprotein Epitope Utilizes a Highly Restricted Vβ but Diverse Vα Repertoire: Functional and Structural Implications

Journal of molecular biology, 2007-09, Vol.372 (2), p.535-548

2007

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Induced Fit and the Entropy of Structural Adaptation in the Complexation of CAP and [lamda]-Repressor with Cognate DNA Sequences

Biophysical journal, 2005-05, Vol.88 (5), p.3147

2005

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CTL recognition of a protective immunodominant influenza A virus nucleoprotein epitope utilizes a highly restricted Vbeta but diverse Valpha repertoire: functional and structural implications

Journal of molecular biology, 2007-09, Vol.372 (2), p.535-548

2007

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Structure and axis curvature in two dA 6 ·dT 6 DNA oligonucleotides: Comparison of molecular dynamics simulations with results from crystallography and NMR spectroscopy

Biopolymers, 2004-12, Vol.75 (6), p.468-479

2004

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Structure and axis curvature in two dA sub(6).dT sub(6) DNA oligonucleotides: Comparison of molecular dynamics simulations with results from crystallography and NMR spectroscopy

Biopolymers, 2004-12, Vol.75 (6), p.468-479

2004

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Structure and axis curvature in two dA6 x dT6 DNA oligonucleotides: comparison of molecular dynamics simulations with results from crystallography and NMR spectroscopy

Biopolymers, 2004-12, Vol.75 (6), p.468-479

2004

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Computational Methods in the Optimization of Biologic Modalities

Developability of Biotherapeutics, 2015

2015

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Human subtilase SKI-1/S1P is a master regulator of the HCV Lifecycle and a potential host cell target for developing indirect-acting antiviral agents

Spectroscopic and Molecular Dynamics Evidence for a Sequential Mechanism for the A-to-B Transition in DNA

Improving biophysical properties of a bispecific antibody scaffold to aid developability: quality by molecular design

Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. II: Sequence Context Effects on the Dynamical Structures of the 10 Unique Dinucleotide Steps

Protein engineering and the use of molecular modeling and simulation: The case of heterodimeric Fc engineering

Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. I. Research Design and Results on d(C pG) Steps

Studies of base pair sequence effects on DNA solvation based on all-atom molecular dynamics simulations

LC-MS characterization and purity assessment of a prototype bispecific antibody

Can Absolute Free Energies of Association Be Estimated from Molecular Mechanical Simulations? The Biotin−Streptavidin System Revisited

Prokaryotic Gene Finding Based on Physicochemical Characteristics of Codons Calculated from Molecular Dynamics Simulations

Can free energy calculations be fast and accurate at the same time? Binding of low-affinity, non-peptide inhibitors to the SH2 domain of the src protein

Structural bioinformatics of DNA: a web-based tool for the analysis of molecular dynamics results and structure prediction

Root Mean Square Deviation Probability Analysis of Molecular Dynamics Trajectories on DNA

Molecular dynamics simulations of DNA curvature and flexibility: Helix phasing and premelting

Free Energy Analysis of Protein–DNA Binding: The EcoRI Endonuclease–DNA Complex

Induced Fit and the Entropy of Structural Adaptation in the Complexation of CAP and λ-Repressor with Cognate DNA Sequences

Axis Curvature and Ligand Induced Bending in the CAP-DNA Oligomers

Structure and axis curvature in two dA6·dT6 DNA oligonucleotides: Comparison of molecular dynamics simulations with results from crystallography and NMR spectroscopy

CTL Recognition of a Protective Immunodominant Influenza A Virus Nucleoprotein Epitope Utilizes a Highly Restricted Vβ but Diverse Vα Repertoire: Functional and Structural Implications

Induced Fit and the Entropy of Structural Adaptation in the Complexation of CAP and [lamda]-Repressor with Cognate DNA Sequences

CTL recognition of a protective immunodominant influenza A virus nucleoprotein epitope utilizes a highly restricted Vbeta but diverse Valpha repertoire: functional and structural implications

Structure and axis curvature in two dA 6 ·dT 6 DNA oligonucleotides: Comparison of molecular dynamics simulations with results from crystallography and NMR spectroscopy

Structure and axis curvature in two dA sub(6).dT sub(6) DNA oligonucleotides: Comparison of molecular dynamics simulations with results from crystallography and NMR spectroscopy

Structure and axis curvature in two dA6 x dT6 DNA oligonucleotides: comparison of molecular dynamics simulations with results from crystallography and NMR spectroscopy

Computational Methods in the Optimization of Biologic Modalities

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