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Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA

Bioinformatics, 2015-08, Vol.31 (15), p.2461-2468

2015

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Disordered microbial communities in the upper respiratory tract of cigarette smokers

PloS one, 2010-12, Vol.5 (12), p.e15216-e15216

2010

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Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract

American journal of respiratory and critical care medicine, 2011-10, Vol.184 (8), p.957-963

2011

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Human caspase-4 mediates noncanonical inflammasome activation against gram-negative bacterial pathogens

Proceedings of the National Academy of Sciences - PNAS, 2015-05, Vol.112 (21), p.6688-6693

2015

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Administration of nucleoside-modified mRNA encoding broadly neutralizing antibody protects humanized mice from HIV-1 challenge

Nature communications, 2017-03, Vol.8 (1), p.14630-8, Article 14630

2017

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Optimizing methods and dodging pitfalls in microbiome research

Microbiome, 2017-05, Vol.5 (1), p.52-14, Article 52

2017

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Detection of SARS-CoV-2 RNA using RT-LAMP and molecular beacons

Genome Biology, 2021-06, Vol.22 (1), p.169-169, Article 169

2021

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Innate Lymphoid Cells Promote Anatomical Containment of Lymphoid-Resident Commensal Bacteria

Science (American Association for the Advancement of Science), 2012-06, Vol.336 (6086), p.1321-1325

2012

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Supraphysiologic control over HIV-1 replication mediated by CD8 T cells expressing a re-engineered CD4-based chimeric antigen receptor

PLoS pathogens, 2017-10, Vol.13 (10), p.e1006613-e1006613

2017

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Alterations in the respiratory tract microbiome in COVID-19: current observations and potential significance

Microbiome, 2022-10, Vol.10 (1), p.165-14, Article 165

2022

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The Role of the Lung Microbiome in Health and Disease: A National Heart, Lung, and Blood Institute Workshop Report

American journal of respiratory and critical care medicine, 2013-06, Vol.187 (12), p.1382-1387

2013

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Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts

PloS one, 2012-09, Vol.7 (9), p.e42786-e42786

2012

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Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome

mBio, 2021-08, Vol.12 (4), p.e0177721-e0177721

2021

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Composition and dynamics of the respiratory tract microbiome in intubated patients

Microbiome, 2016-02, Vol.4 (7), p.7-7, Article 7

2016

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Multiple Introductions of SARS-CoV-2 Alpha and Delta Variants into White-Tailed Deer in Pennsylvania

mBio, 2022-10, Vol.13 (5), p.e0210122

2022

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Tracking gut microbiome and bloodstream infection in critically ill adults

PloS one, 2023-10, Vol.18 (10), p.e0289923-e0289923

2023

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CD4 depletion in SIV-infected macaques results in macrophage and microglia infection with rapid turnover of infected cells

PLoS pathogens, 2014-10, Vol.10 (10), p.e1004467

2014

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Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals

American journal of respiratory and critical care medicine, 2015-12, Vol.192 (11), p.1335-1344

2015

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Microbial Lineages in Sarcoidosis. A Metagenomic Analysis Tailored for Low-Microbial Content Samples

American journal of respiratory and critical care medicine, 2018-01, Vol.197 (2), p.225-234

2018

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Statin modulation of monocyte phenotype and function: implications for HIV-1-associated neurocognitive disorders

Journal of neurovirology, 2016-10, Vol.22 (5), p.584-596

2016

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Viruses, periodontitis, and comorbidities

Periodontology 2000, 2022-06, Vol.89 (1), p.190-206

2022

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Comparison of SARS-CoV-2 variants of concern in primary human nasal cultures demonstrates Delta as most cytopathic and Omicron as fastest replicating

mBio, 2024-04, Vol.15 (4), p.e0312923-e0312923

2024

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SARS-CoV-2 evolution during prolonged infection in immunocompromised patients

mBio, 2024-03, Vol.15 (3), p.e0011024-e0011024

2024

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The lung microbiome: progress and promise

The Journal of clinical investigation, 2021-08, Vol.131 (15)

2021

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siRNA-directed inhibition of HIV-1 infection

Nature medicine, 2002-07, Vol.8 (7), p.681-686

2002

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Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA

Disordered microbial communities in the upper respiratory tract of cigarette smokers

Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract

Human caspase-4 mediates noncanonical inflammasome activation against gram-negative bacterial pathogens

Administration of nucleoside-modified mRNA encoding broadly neutralizing antibody protects humanized mice from HIV-1 challenge

Optimizing methods and dodging pitfalls in microbiome research

Detection of SARS-CoV-2 RNA using RT-LAMP and molecular beacons

Innate Lymphoid Cells Promote Anatomical Containment of Lymphoid-Resident Commensal Bacteria

Supraphysiologic control over HIV-1 replication mediated by CD8 T cells expressing a re-engineered CD4-based chimeric antigen receptor

Alterations in the respiratory tract microbiome in COVID-19: current observations and potential significance

The Role of the Lung Microbiome in Health and Disease: A National Heart, Lung, and Blood Institute Workshop Report

Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts

Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome

Composition and dynamics of the respiratory tract microbiome in intubated patients

Multiple Introductions of SARS-CoV-2 Alpha and Delta Variants into White-Tailed Deer in Pennsylvania

Tracking gut microbiome and bloodstream infection in critically ill adults

CD4 depletion in SIV-infected macaques results in macrophage and microglia infection with rapid turnover of infected cells

Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals

Microbial Lineages in Sarcoidosis. A Metagenomic Analysis Tailored for Low-Microbial Content Samples

Statin modulation of monocyte phenotype and function: implications for HIV-1-associated neurocognitive disorders

Viruses, periodontitis, and comorbidities

Comparison of SARS-CoV-2 variants of concern in primary human nasal cultures demonstrates Delta as most cytopathic and Omicron as fastest replicating

SARS-CoV-2 evolution during prolonged infection in immunocompromised patients

The lung microbiome: progress and promise

siRNA-directed inhibition of HIV-1 infection

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