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A structural biology community assessment of AlphaFold2 applications

Nature structural & molecular biology, 2022-11, Vol.29 (11), p.1056-1067

2022

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Sampling alternative conformational states of transporters and receptors with AlphaFold2

eLife, 2022-03, Vol.11

2022

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Template-free prediction of a new monotopic membrane protein fold and assembly by AlphaFold2

Biophysical journal, 2023-06, Vol.122 (11), p.2041-2052

2023

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AlphaFold2 models indicate that protein sequence determines both structure and dynamics

Scientific reports, 2022-06, Vol.12 (1), p.10696-15, Article 10696

2022

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Exploring AlphaFold2's Performance on Predicting Amino Acid Side-Chain Conformations and Its Utility in Crystal Structure Determination of B318L Protein

International journal of molecular sciences, 2023-02, Vol.24 (3)

2023

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Benchmarking Refined and Unrefined AlphaFold2 Structures for Hit Discovery

Journal of chemical information and modeling, 2023-03, Vol.63 (6), p.1656-1667

2023

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Computational Workflow for Refining AlphaFold Models in Drug Design Using Kinetic and Thermodynamic Binding Calculations: A Case Study for the Unresolved Inactive Human Adenosine A 3 Receptor

The journal of physical chemistry. B, 2024-02, Vol.128 (4), p.914-936

2024

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Fetal programming: in utero exposure to acrylamide leads to intergenerational disrupted ovarian function and accelerated ovarian aging

Aging (Albany, NY.), 2022-09, Vol.14 (17), p.6887-6904

2022

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Activation function 1 of progesterone receptor is required for progesterone antagonism of oestrogen action in the uterus

BMC biology, 2022-10, Vol.20 (1), p.222-18, Article 222

2022

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AlphaFold2 and its applications in the fields of biology and medicine

Signal transduction and targeted therapy, 2023-03, Vol.8 (1), p.115-14, Article 115

2023

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De novo protein design by inversion of the AlphaFold structure prediction network

Protein science, 2023-06, Vol.32 (6), p.e4653-n/a

2023

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The impact of AI‐based modeling on the accuracy of protein assembly prediction: Insights from CASP15

Proteins, structure, function, and bioinformatics, 2023-12, Vol.91 (12), p.1636-1657

2023

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Tertiary structure assessment at CASP15

Proteins, structure, function, and bioinformatics, 2023-12, Vol.91 (12), p.1616-1635

2023

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Mitigative Potential of Novel Lactobacillus plantarum TISTR 2076 against the Aflatoxins-Associated Oxidative Stress and Histopathological Alterations in Liver and Kidney of Broiler Chicks during the Entire Growth Period

Toxins, 2022-10, Vol.14 (10), p.689

2022

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Structures of Plasmodium falciparum Chloroquine Resistance Transporter (PfCRT) Isoforms and Their Interactions with Chloroquine

Biochemistry (Easton), 2023-03, Vol.62 (5), p.1093-1110

2023

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Activation function 2 (AF2) domain of estrogen receptor-α regulates mechanotransduction during bone fracture healing in estrogen-competent mice

Bone (New York, N.Y.), 2023-07, Vol.172, p.116781-116781, Article 116781

2023

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A comparative study of protein structure prediction tools for challenging targets: Snake venom toxins

Toxicon (Oxford), 2024-02, Vol.238, p.107559-107559, Article 107559

2024

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AI-based AlphaFold2 significantly expands the structural space of the autophagy pathway

Autophagy, 2023-12, Vol.19 (12), p.3201-3220

2023

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AlphaFold2-multimer guided high-accuracy prediction of typical and atypical ATG8-binding motifs

PLoS biology, 2023-02, Vol.21 (2), p.e3001962

2023

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A Perspective on the Prospective Use of AI in Protein Structure Prediction

Journal of chemical information and modeling, 2024-01, Vol.64 (1), p.26-41

2024

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Combined prediction and design reveals the target recognition mechanism of an intrinsically disordered protein interaction domain

Proceedings of the National Academy of Sciences - PNAS, 2023-09, Vol.120 (39), p.e2305603120

2023

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How AlphaFold2 shaped the structural coverage of the human transmembrane proteome

Scientific reports, 2023-11, Vol.13 (1), p.20283-11, Article 20283

2023

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Structural basis of the activation of PPARγ by the plasticizer metabolites MEHP and MINCH

Environment international, 2023-03, Vol.173, p.107822-107822, Article 107822

2023

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Blind assessment of monomeric AlphaFold2 protein structure models with experimental NMR data

Journal of magnetic resonance (1997), 2023-07, Vol.352, p.107481-107481, Article 107481

2023

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Exploring Host-Binding Machineries of Mycobacteriophages with AlphaFold2

Journal of virology, 2023-03, Vol.97 (3), p.e0179322-22

2023

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A structural biology community assessment of AlphaFold2 applications

Sampling alternative conformational states of transporters and receptors with AlphaFold2

Template-free prediction of a new monotopic membrane protein fold and assembly by AlphaFold2

AlphaFold2 models indicate that protein sequence determines both structure and dynamics

Exploring AlphaFold2's Performance on Predicting Amino Acid Side-Chain Conformations and Its Utility in Crystal Structure Determination of B318L Protein

Benchmarking Refined and Unrefined AlphaFold2 Structures for Hit Discovery

Computational Workflow for Refining AlphaFold Models in Drug Design Using Kinetic and Thermodynamic Binding Calculations: A Case Study for the Unresolved Inactive Human Adenosine A 3 Receptor

Fetal programming: in utero exposure to acrylamide leads to intergenerational disrupted ovarian function and accelerated ovarian aging

Activation function 1 of progesterone receptor is required for progesterone antagonism of oestrogen action in the uterus

AlphaFold2 and its applications in the fields of biology and medicine

De novo protein design by inversion of the AlphaFold structure prediction network

The impact of AI‐based modeling on the accuracy of protein assembly prediction: Insights from CASP15

Tertiary structure assessment at CASP15

Mitigative Potential of Novel Lactobacillus plantarum TISTR 2076 against the Aflatoxins-Associated Oxidative Stress and Histopathological Alterations in Liver and Kidney of Broiler Chicks during the Entire Growth Period

Structures of Plasmodium falciparum Chloroquine Resistance Transporter (PfCRT) Isoforms and Their Interactions with Chloroquine

Activation function 2 (AF2) domain of estrogen receptor-α regulates mechanotransduction during bone fracture healing in estrogen-competent mice

A comparative study of protein structure prediction tools for challenging targets: Snake venom toxins

AI-based AlphaFold2 significantly expands the structural space of the autophagy pathway

AlphaFold2-multimer guided high-accuracy prediction of typical and atypical ATG8-binding motifs

A Perspective on the Prospective Use of AI in Protein Structure Prediction

Combined prediction and design reveals the target recognition mechanism of an intrinsically disordered protein interaction domain

How AlphaFold2 shaped the structural coverage of the human transmembrane proteome

Structural basis of the activation of PPARγ by the plasticizer metabolites MEHP and MINCH

Blind assessment of monomeric AlphaFold2 protein structure models with experimental NMR data

Exploring Host-Binding Machineries of Mycobacteriophages with AlphaFold2

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