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Visualizing Biological Membrane Organization and Dynamics

Journal of molecular biology, 2019-05, Vol.431 (10), p.1889-1919

Baaden, Marc

2019

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Deep inside molecules — digital twins at the nanoscale

Virtual Reality & Intelligent Hardware, 2022-08, Vol.4 (4), p.324-341

Baaden, Marc

2022

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Game on, science - how video game technology may help biologists tackle visualization challenges

PloS one, 2013-03, Vol.8 (3), p.e57990-e57990

2013

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Biomimetic Approach for Highly Selective Artificial Water Channels Based on Tubular Pillar[5]arene Dimers

Angewandte Chemie (International ed.), 2020-12, Vol.59 (51), p.23213-23219

2020

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UNILIPID, a Methodology for Energetically Accurate Prediction of Protein Insertion into Implicit Membranes of Arbitrary Shape

Membranes (Basel), 2023-03, Vol.13 (3), p.362

2023

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Molecular Insights into Substrate Binding of the Outer Membrane Enzyme OmpT

Catalysts, 2023-01, Vol.13 (2), p.214

2023

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String method solution of the gating pathways for a pentameric ligand-gated ion channel

Proceedings of the National Academy of Sciences - PNAS, 2017-05, Vol.114 (21), p.E4158-E4167

2017

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X-ray structure of a pentameric ligand-gated ion channel in an apparently open conformation

Nature, 2009-01, Vol.457 (7225), p.111-114

2009

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Salt-Excluding Artificial Water Channels Exhibiting Enhanced Dipolar Water and Proton Translocation

Journal of the American Chemical Society, 2016-04, Vol.138 (16), p.5403-5409

2016

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Design X Bioinformatics: a community-driven initiative to connect bioinformatics and design

Journal of integrative bioinformatics, 2022-07, Vol.19 (2), p.389-92

2022

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Urgent computing and fair sharing of molecular-level structure and dynamics in COVID times

Biophysical journal, 2022-02, Vol.121 (3), p.528a-528a

Baaden, Marc

2022

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Structural basis for ion permeation mechanism in pentameric ligand-gated ion channels

The EMBO journal, 2013-03, Vol.32 (5), p.728-741

2013

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Sites of Anesthetic Inhibitory Action on a Cationic Ligand-Gated Ion Channel

Structure (London), 2016-04, Vol.24 (4), p.595-605

2016

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From Virtual Reality to Immersive Analytics in Bioinformatics

Journal of integrative bioinformatics, 2018-07, Vol.15 (2), p.506-8

2018

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Ten simple rules to create a serious game, illustrated with examples from structural biology

PLoS computational biology, 2018-03, Vol.14 (3), p.e1005955-e1005955

2018

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One-microsecond molecular dynamics simulation of channel gating in a nicotinic receptor homologue

Proceedings of the National Academy of Sciences - PNAS, 2010-04, Vol.107 (14), p.6275-6280

2010

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The major β-catenin/E-cadherin junctional binding site is a primary molecular mechano-transductor of differentiation in vivo

eLife, 2018-07, Vol.7

2018

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Controlling Redox Enzyme Orientation at Planar Electrodes

Catalysts, 2018-05, Vol.8 (5), p.192

2018

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Allosteric and hyperekplexic mutant phenotypes investigated on an α₁ glycine receptor transmembrane structure

Proceedings of the National Academy of Sciences - PNAS, 2015-03, Vol.112 (9), p.2865-2870

2015

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A Molecular Perspective on Mitochondrial Membrane Fusion: From the Key Players to Oligomerization and Tethering of Mitofusin

The Journal of membrane biology, 2019-10, Vol.252 (4-5), p.293-306

2019

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Fast and Interactive Positioning of Proteins within Membranes

Algorithms, 2022-11, Vol.15 (11), p.415

2022

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Design – a new way to look at old molecules

Journal of integrative bioinformatics, 2022-07, Vol.19 (2), p.42-52

2022

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How cations can assist DNase I in DNA binding and hydrolysis

PLoS computational biology, 2010-11, Vol.6 (11), p.e1001000-e1001000

2010

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UnityMol prototype for FAIR sharing of molecular‐visualization experiences: from pictures in the cloud to collaborative virtual reality exploration in immersive 3D environments

Acta crystallographica. Section D, Biological crystallography., 2021-06, Vol.77 (6), p.746-754

2021

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Atomic structure and dynamics of pentameric ligand-gated ion channels: new insight from bacterial homologues

The Journal of physiology, 2010-02, Vol.588 (4), p.565-572

2010

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Visualizing Biological Membrane Organization and Dynamics

Deep inside molecules — digital twins at the nanoscale

Game on, science - how video game technology may help biologists tackle visualization challenges

Biomimetic Approach for Highly Selective Artificial Water Channels Based on Tubular Pillar[5]arene Dimers

UNILIPID, a Methodology for Energetically Accurate Prediction of Protein Insertion into Implicit Membranes of Arbitrary Shape

Molecular Insights into Substrate Binding of the Outer Membrane Enzyme OmpT

String method solution of the gating pathways for a pentameric ligand-gated ion channel

X-ray structure of a pentameric ligand-gated ion channel in an apparently open conformation

Salt-Excluding Artificial Water Channels Exhibiting Enhanced Dipolar Water and Proton Translocation

Design X Bioinformatics: a community-driven initiative to connect bioinformatics and design

Urgent computing and fair sharing of molecular-level structure and dynamics in COVID times

Structural basis for ion permeation mechanism in pentameric ligand-gated ion channels

Sites of Anesthetic Inhibitory Action on a Cationic Ligand-Gated Ion Channel

From Virtual Reality to Immersive Analytics in Bioinformatics

Ten simple rules to create a serious game, illustrated with examples from structural biology

One-microsecond molecular dynamics simulation of channel gating in a nicotinic receptor homologue

The major β-catenin/E-cadherin junctional binding site is a primary molecular mechano-transductor of differentiation in vivo

Controlling Redox Enzyme Orientation at Planar Electrodes

Allosteric and hyperekplexic mutant phenotypes investigated on an α₁ glycine receptor transmembrane structure

A Molecular Perspective on Mitochondrial Membrane Fusion: From the Key Players to Oligomerization and Tethering of Mitofusin

Fast and Interactive Positioning of Proteins within Membranes

Design – a new way to look at old molecules

How cations can assist DNase I in DNA binding and hydrolysis

UnityMol prototype for FAIR sharing of molecular‐visualization experiences: from pictures in the cloud to collaborative virtual reality exploration in immersive 3D environments

Atomic structure and dynamics of pentameric ligand-gated ion channels: new insight from bacterial homologues

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