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Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles

Proceedings of the National Academy of Sciences - PNAS, 2015-02, Vol.112 (8), p.E862-E870

2015

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Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data

Bioinformatics, 2015-10, Vol.31 (20), p.3356-3358

2015

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Quantifying selection in high-throughput Immunoglobulin sequencing data sets

Nucleic acids research, 2012-09, Vol.40 (17), p.e134

2012

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RAbHIT: R Antibody Haplotype Inference Tool

Bioinformatics, 2019-11, Vol.35 (22), p.4840-4842

2019

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Fast Image-Guided Stratification Using Anti-Programmed Death Ligand 1 Gold Nanoparticles for Cancer Immunotherapy

ACS nano, 2017-11, Vol.11 (11), p.11127-11134

2017

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Mosaic deletion patterns of the human antibody heavy chain gene locus shown by Bayesian haplotyping

Nature communications, 2019-02, Vol.10 (1), p.628-14, Article 628

2019

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The hot (invisible?) hand: can time sequence patterns of success/failure in sports be modeled as repeated random independent trials?

PloS one, 2011-10, Vol.6 (10), p.e24532-e24532

2011

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pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires

Bioinformatics (Oxford, England), 2014-07, Vol.30 (13), p.1930-1932

2014

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Hepatitis C virus leaves an epigenetic signature post cure of infection by direct-acting antivirals

PLoS genetics, 2019-06, Vol.15 (6), p.e1008181

2019

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B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes

Science translational medicine, 2014-08, Vol.6 (248), p.248ra107

2014

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VDJbase: an adaptive immune receptor genotype and haplotype database

Nucleic acids research, 2020-01, Vol.48 (D1), p.D1051

2020

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AIRRscape: An interactive tool for exploring B-cell receptor repertoires and antibody responses

PLoS computational biology, 2022-09, Vol.18 (9), p.e1010052-e1010052

2022

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BCR affinity differentially regulates colonization of the subepithelial dome and infiltration into germinal centers within Peyer's patches

Nature immunology, 2019-04, Vol.20 (4), p.482

2019

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Commentary on Population matched (pm) germline allelic variants of immunoglobulin (IG) loci: relevance in infectious diseases and vaccination studies in human populations

Genes and immunity, 2021-12, Vol.22 (7-8), p.335-338

2021

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Machine Learning Analysis of Naïve B-Cell Receptor Repertoires Stratifies Celiac Disease Patients and Controls

Frontiers in immunology, 2021-03, Vol.12, p.627813-627813

2021

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Axonal Tree Morphology and Signal Propagation Dynamics Improve Interneuron Classification

Neuroinformatics (Totowa, N.J.), 2020-10, Vol.18 (4), p.581-590

2020

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High-resolution antibody dynamics of vaccine-induced immune responses

Proceedings of the National Academy of Sciences - PNAS, 2014-04, Vol.111 (13), p.4928-4933

2014

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"Hot hand" on strike: bowling data indicates correlation to recent past results, not causality

PloS one, 2012-01, Vol.7 (1), p.e30112-e30112

2012

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OGRDB: a reference database of inferred immune receptor genes

Nucleic acids research, 2020-01, Vol.48 (D1), p.D964

2020

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Immune2vec: Embedding B/T Cell Receptor Sequences in ℝN Using Natural Language Processing

Frontiers in immunology, 2021-07, Vol.12

2021

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B cell class switch recombination is regulated by DYRK1A through MSH6 phosphorylation

Nature communications, 2023-03, Vol.14 (1), p.1462-1462, Article 1462

2023

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Editorial: Methods and Applications of Computational Immunology

Frontiers in immunology, 2019-11, Vol.10, p.2818-2818

2019

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Identification of Subject-Specific Immunoglobulin Alleles From Expressed Repertoire Sequencing Data

Frontiers in immunology, 2019-02, Vol.10, p.129-129

2019

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Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data

Frontiers in immunology, 2013, Vol.4, p.358-358

2013

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Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE)

PLoS computational biology, 2019-04, Vol.15 (4), p.e1006899-e1006899

2019

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Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles

Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data

Quantifying selection in high-throughput Immunoglobulin sequencing data sets

RAbHIT: R Antibody Haplotype Inference Tool

Fast Image-Guided Stratification Using Anti-Programmed Death Ligand 1 Gold Nanoparticles for Cancer Immunotherapy

Mosaic deletion patterns of the human antibody heavy chain gene locus shown by Bayesian haplotyping

The hot (invisible?) hand: can time sequence patterns of success/failure in sports be modeled as repeated random independent trials?

pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires

Hepatitis C virus leaves an epigenetic signature post cure of infection by direct-acting antivirals

B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes

VDJbase: an adaptive immune receptor genotype and haplotype database

AIRRscape: An interactive tool for exploring B-cell receptor repertoires and antibody responses

BCR affinity differentially regulates colonization of the subepithelial dome and infiltration into germinal centers within Peyer's patches

Commentary on Population matched (pm) germline allelic variants of immunoglobulin (IG) loci: relevance in infectious diseases and vaccination studies in human populations

Machine Learning Analysis of Naïve B-Cell Receptor Repertoires Stratifies Celiac Disease Patients and Controls

Axonal Tree Morphology and Signal Propagation Dynamics Improve Interneuron Classification

High-resolution antibody dynamics of vaccine-induced immune responses

"Hot hand" on strike: bowling data indicates correlation to recent past results, not causality

OGRDB: a reference database of inferred immune receptor genes

Immune2vec: Embedding B/T Cell Receptor Sequences in ℝN Using Natural Language Processing

B cell class switch recombination is regulated by DYRK1A through MSH6 phosphorylation

Editorial: Methods and Applications of Computational Immunology

Identification of Subject-Specific Immunoglobulin Alleles From Expressed Repertoire Sequencing Data

Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data

Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE)

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