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Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome

Nature communications, 2020-05, Vol.11 (1), p.2610-12, Article 2610

2020

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Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks

Applied and environmental microbiology, 2017-08, Vol.83 (16)

2017

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Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants

mSystems, 2020-11, Vol.5 (6)

2020

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Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir

mSystems, 2016-09, Vol.1 (5)

2016

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Translating Omics to Food Microbiology

Annual review of food science and technology, 2017-02, Vol.8 (1), p.113-134

2017

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Distinct actions of the fermented beverage kefir on host behaviour, immunity and microbiome gut-brain modules in the mouse

Microbiome, 2020-05, Vol.8 (1), p.67-67, Article 67

2020

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Species classifier choice is a key consideration when analysing low-complexity food microbiome data

Microbiome, 2018-03, Vol.6 (1), p.50-50, Article 50

2018

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Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways

iScience, 2023-10, Vol.26 (10), p.108004-108004, Article 108004

2023

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Differences in Faecal Microbiome Taxonomy, Diversity and Functional Potential in a Bovine Cohort Experimentally Challenged with Mycobacterium avium subsp. paratuberculosis (MAP)

Animals (Basel), 2023-05, Vol.13 (10), p.1652

2023

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The Lung Microbiome in Young Children with Cystic Fibrosis: A Prospective Cohort Study

Microorganisms (Basel), 2021-02, Vol.9 (3), p.492

2021

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Comparison of the relative impacts of acute consumption of an inulin-enriched diet, milk kefir or a commercial probiotic product on the human gut microbiome and metabolome

NPJ science of food, 2023-08, Vol.7 (1), p.41-41, Article 41

2023

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Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset

Frontiers in microbiology, 2020-11, Vol.11, p.575377-575377

2020

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Recognition of yeast β-glucan particles triggers immunometabolic signaling required for trained immunity

iScience, 2024-03, Vol.27 (3), p.109030-109030, Article 109030

2024

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Integrated molecular approaches for fermented food microbiome research

FEMS microbiology reviews, 2023-03, Vol.47 (2), p.1

2023

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Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality

Nature food, 2020-08, Vol.1 (8), p.500-510

2020

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Bioinformatic approaches for studying the microbiome of fermented food

Critical reviews in microbiology, 2023-11, Vol.ahead-of-print (ahead-of-print), p.1-33

2023

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Kefir ameliorates specific microbiota-gut-brain axis impairments in a mouse model relevant to autism spectrum disorder

Brain, behavior, and immunity, 2021-10, Vol.97, p.119-134

2021

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The effect of ovine milk fermentation on the antithrombotic properties of polar lipids

Journal of functional foods, 2019-03, Vol.54, p.289-300

2019

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Correction for Walsh et al., Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir

mSystems, 2017-01, Vol.2 (1)

2017

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A framework for microbiome science in public health

Nature medicine, 2021-05, Vol.27 (5), p.766-774

2021

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Differences in Faecal Microbiome Taxonomy, Diversity and Functional Potential in a Bovine Cohort Experimentally Challenged with IMycobacterium avium/I subsp. Iparatuberculosis/I

Animals (Basel), 2023-05, Vol.13 (10)

2023

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In silico prediction and in vitro assessment of microbial substrate utilisation: a focus on newly identified health promoting gut bacteria

Access microbiology, 2020-07, Vol.2 (7A)

2020

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High-Throughput Sequencing-Based Characterisation of Fermented Foods and Their Impacts on Host Gut Microbiota

Walsh, Aaron M

2018

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Crystallographic and electrophilic fragment screening of the SARS-CoV-2 main protease

Nature communications, 2020-10, Vol.11 (1), p.5047-5047, Article 5047

2020

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Transcriptomic analysis of the honey bee (Apis mellifera) queen brain reveals that gene expression is affected by pesticide exposure during development

PloS one, 2023-04, Vol.18 (4), p.e0284929-e0284929

2023

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Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome

Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks

Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants

Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir

Translating Omics to Food Microbiology

Distinct actions of the fermented beverage kefir on host behaviour, immunity and microbiome gut-brain modules in the mouse

Species classifier choice is a key consideration when analysing low-complexity food microbiome data

Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways

Differences in Faecal Microbiome Taxonomy, Diversity and Functional Potential in a Bovine Cohort Experimentally Challenged with Mycobacterium avium subsp. paratuberculosis (MAP)

The Lung Microbiome in Young Children with Cystic Fibrosis: A Prospective Cohort Study

Comparison of the relative impacts of acute consumption of an inulin-enriched diet, milk kefir or a commercial probiotic product on the human gut microbiome and metabolome

Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset

Recognition of yeast β-glucan particles triggers immunometabolic signaling required for trained immunity

Integrated molecular approaches for fermented food microbiome research

Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality

Bioinformatic approaches for studying the microbiome of fermented food

Kefir ameliorates specific microbiota-gut-brain axis impairments in a mouse model relevant to autism spectrum disorder

The effect of ovine milk fermentation on the antithrombotic properties of polar lipids

Correction for Walsh et al., Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir

A framework for microbiome science in public health

Differences in Faecal Microbiome Taxonomy, Diversity and Functional Potential in a Bovine Cohort Experimentally Challenged with IMycobacterium avium/I subsp. Iparatuberculosis/I

In silico prediction and in vitro assessment of microbial substrate utilisation: a focus on newly identified health promoting gut bacteria

High-Throughput Sequencing-Based Characterisation of Fermented Foods and Their Impacts on Host Gut Microbiota

Crystallographic and electrophilic fragment screening of the SARS-CoV-2 main protease

Transcriptomic analysis of the honey bee (Apis mellifera) queen brain reveals that gene expression is affected by pesticide exposure during development

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