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Development of a Novel mcr-6 to mcr-9 Multiplex PCR and Assessment of mcr-1 to mcr-9 Occurrence in Colistin-Resistant Salmonella enterica Isolates From Environment, Feed, Animals and Food (2011-2018) in Germany

Frontiers in microbiology, 2020-02, Vol.11, p.80-80

2020

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Decentralized Investigation of Bacterial Outbreaks Based on Hashed cgMLST

Frontiers in microbiology, 2021-05, Vol.12, p.649517-649517

2021

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Typing methods based on whole genome sequencing data

One health outlook, 2020-02, Vol.2 (1), p.3-19, Article 3

2020

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Fishing in the Soup - Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing

Frontiers in microbiology, 2019-08, Vol.10, p.1805-1805

2019

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Species-Specific Quality Control, Assembly and Contamination Detection in Microbial Isolate Sequences with AQUAMIS

Genes, 2021-04, Vol.12 (5), p.644

2021

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Identification of knowledge gaps in whole-genome sequence analysis of multi-resistant thermotolerant Campylobacter spp

BMC genomics, 2024-02, Vol.25 (1), p.156-156, Article 156

2024

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Whole genome sequencing reveals extended natural transformation in Campylobacter impacting diagnostics and the pathogens adaptive potential

Scientific reports, 2020-02, Vol.10 (1), p.3686-3686, Article 3686

2020

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Effect of ribosome shielding on mRNA stability

Physical biology, 2013-08, Vol.10 (4), p.046008-046008

2013

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Genetic characterization of a multidrug-resistant Salmonella enterica serovar Agona isolated from a dietary supplement in Germany

Frontiers in microbiology, 2023-11, Vol.14, p.1284929-1284929

2023

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Toward an Integrated Genome-Based Surveillance of Salmonella enterica in Germany

Frontiers in microbiology, 2021-02, Vol.12, p.626941

2021

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German-Wide Interlaboratory Study Compares Consistency, Accuracy and Reproducibility of Whole-Genome Short Read Sequencing

Frontiers in microbiology, 2020-09, Vol.11, p.573972-573972

2020

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Clonal relation between Salmonella enterica subspecies enterica serovar Dublin strains of bovine and food origin in Germany

Frontiers in veterinary science, 2023-05, Vol.10, p.1081611-1081611

2023

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Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal Escherichia coli

Microorganisms (Basel), 2021-03, Vol.9 (3), p.598

2021

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Genetic and Phenotypic Virulence Potential of Non-O1/Non-O139 Vibrio cholerae Isolated from German Retail Seafood

Microorganisms (Basel), 2023-11, Vol.11 (11), p.2751

2023

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Impact of wet-lab protocols on quality of whole-genome short-read sequences from foodborne microbial pathogens

Frontiers in microbiology, 2023-11, Vol.14, p.1253362-1253362

2023

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Phenotypic and Genotypic Properties of Fluoroquinolone-Resistant, qnr-Carrying Escherichia coli Isolated from the German Food Chain in 2017

Microorganisms (Basel), 2021-06, Vol.9 (6), p.1308

2021

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Transient phenomena in gene expression after induction of transcription

PloS one, 2012-04, Vol.7 (4), p.e35044-e35044

2012

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Genomic Insights into the Mobilome and Resistome of Sentinel Microorganisms Originating from Farms of Two Different Swine Production Systems

Microbiology spectrum, 2022-12, Vol.10 (6), p.e0289622-e0289622

2022

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First complete genome sequence and comparative analysis of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) indicates host adaptation traits to sheep

Gut pathogens, 2019-10, Vol.11 (1), p.48-8, Article 48

2019

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Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset

Frontiers in microbiology, 2020-11, Vol.11, p.575377-575377

2020

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What WGS Reveals about Salmonella enterica subsp. enterica in Wildlife in Germany

Microorganisms (Basel), 2021-09, Vol.9 (9), p.1911

2021

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Exploring Long-Read Metagenomics for Full Characterization of Shiga Toxin-Producing Escherichia coli in Presence of Commensal E. coli

Microorganisms (Basel), 2023-08, Vol.11 (8), p.2043

2023

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Evaluation of a real-time PCR assay for the differentiation of Bacillus cereus group species

Food control, 2021-02, Vol.120, p.107530, Article 107530

2021

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PaPrBaG: A machine learning approach for the detection of novel pathogens from NGS data

Scientific reports, 2017-01, Vol.7 (1), p.39194-39194, Article 39194

2017

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Characterization of mcr-5 -Harboring Salmonella enterica subsp. enterica Serovar Typhimurium Isolates from Animal and Food Origin in Germany

Antimicrobial agents and chemotherapy, 2019-06, Vol.63 (6)

2019

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Development of a Novel mcr-6 to mcr-9 Multiplex PCR and Assessment of mcr-1 to mcr-9 Occurrence in Colistin-Resistant Salmonella enterica Isolates From Environment, Feed, Animals and Food (2011-2018) in Germany

Decentralized Investigation of Bacterial Outbreaks Based on Hashed cgMLST

Typing methods based on whole genome sequencing data

Fishing in the Soup - Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing

Species-Specific Quality Control, Assembly and Contamination Detection in Microbial Isolate Sequences with AQUAMIS

Identification of knowledge gaps in whole-genome sequence analysis of multi-resistant thermotolerant Campylobacter spp

Whole genome sequencing reveals extended natural transformation in Campylobacter impacting diagnostics and the pathogens adaptive potential

Effect of ribosome shielding on mRNA stability

Genetic characterization of a multidrug-resistant Salmonella enterica serovar Agona isolated from a dietary supplement in Germany

Toward an Integrated Genome-Based Surveillance of Salmonella enterica in Germany

German-Wide Interlaboratory Study Compares Consistency, Accuracy and Reproducibility of Whole-Genome Short Read Sequencing

Clonal relation between Salmonella enterica subspecies enterica serovar Dublin strains of bovine and food origin in Germany

Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal Escherichia coli

Genetic and Phenotypic Virulence Potential of Non-O1/Non-O139 Vibrio cholerae Isolated from German Retail Seafood

Impact of wet-lab protocols on quality of whole-genome short-read sequences from foodborne microbial pathogens

Phenotypic and Genotypic Properties of Fluoroquinolone-Resistant, qnr-Carrying Escherichia coli Isolated from the German Food Chain in 2017

Transient phenomena in gene expression after induction of transcription

Genomic Insights into the Mobilome and Resistome of Sentinel Microorganisms Originating from Farms of Two Different Swine Production Systems

First complete genome sequence and comparative analysis of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) indicates host adaptation traits to sheep

Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset

What WGS Reveals about Salmonella enterica subsp. enterica in Wildlife in Germany

Exploring Long-Read Metagenomics for Full Characterization of Shiga Toxin-Producing Escherichia coli in Presence of Commensal E. coli

Evaluation of a real-time PCR assay for the differentiation of Bacillus cereus group species

PaPrBaG: A machine learning approach for the detection of novel pathogens from NGS data

Characterization of mcr-5 -Harboring Salmonella enterica subsp. enterica Serovar Typhimurium Isolates from Animal and Food Origin in Germany

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