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Prevotella diversity, niches and interactions with the human host

Nature reviews. Microbiology, 2021-09, Vol.19 (9), p.585-599

2021

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Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome

Nature communications, 2020-05, Vol.11 (1), p.2610-12, Article 2610

2020

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Newly Explored Faecalibacterium Diversity Is Connected to Age, Lifestyle, Geography, and Disease

Current biology, 2020-12, Vol.30 (24), p.4932-4943.e4

2020

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Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

Nature communications, 2020-05, Vol.11 (1), p.2500-2500, Article 2500

2020

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Microbial strain-level population structure and genetic diversity from metagenomes

Genome research, 2017-04, Vol.27 (4), p.626

2017

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Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights

PLoS computational biology, 2016-07, Vol.12 (7), p.e1004977-e1004977

2016

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Specific gut microbiome signatures and the associated pro-inflamatory functions are linked to pediatric allergy and acquisition of immune tolerance

Nature communications, 2021-10, Vol.12 (1), p.5958-5958, Article 5958

2021

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MetaPhlAn2 for enhanced metagenomic taxonomic profiling

Nature methods, 2015-10, Vol.12 (10), p.902

2015

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Neonatal antibiotic exposure impairs child growth during the first six years of life by perturbing intestinal microbial colonization

Nature communications, 2021-01, Vol.12 (1), p.443-12, Article 443

2021

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Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Nature medicine, 2019-04, Vol.25 (4), p.667-678

2019

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Strain-level microbial epidemiology and population genomics from shotgun metagenomics

Nature methods, 2016-05, Vol.13 (5), p.435

2016

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Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life

Cell host & microbe, 2018-07, Vol.24 (1), p.146-154.e4

2018

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Reporting guidelines for human microbiome research: the STORMS checklist

Nature Medicine, 2021-11, Vol.27 (11), p.1885-1892

2021

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Host phenotype classification from human microbiome data is mainly driven by the presence of microbial taxa

PLoS computational biology, 2022-04, Vol.18 (4), p.e1010066-e1010066

2022

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Stool microRNA profiles reflect different dietary and gut microbiome patterns in healthy individuals

Gut, 2022-07, Vol.71 (7), p.1302

2022

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Post-Disaster Building Database Updating Using Automated Deep Learning: An Integration of Pre-Disaster OpenStreetMap and Multi-Temporal Satellite Data

Remote sensing (Basel, Switzerland), 2019-10, Vol.11 (20), p.2427

2019

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Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

Genome Biology, 2019-12, Vol.20 (1), p.299-299, Article 299

2019

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Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

Genome Biology, 2020-06, Vol.21 (1), p.138-138, Article 138

2020

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An Active Learning Framework for Hyperspectral Image Classification Using Hierarchical Segmentation

IEEE journal of selected topics in applied earth observations and remote sensing, 2016-02, Vol.9 (2), p.640-654

2016

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A Metabologenomic approach reveals alterations in the gut microbiota of a mouse model of Alzheimer’s disease

PloS one, 2022-08, Vol.17 (8), p.e0273036-e0273036

2022

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Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

NPJ biofilms and microbiomes, 2017-06, Vol.3 (1), p.14-12, Article 14

2017

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Profiling microbial strains in urban environments using metagenomic sequencing data

Biology direct, 2018-05, Vol.13 (1), p.9-9, Article 9

2018

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Prevotella diversity, niches and interactions with the human host

Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome

Newly Explored Faecalibacterium Diversity Is Connected to Age, Lifestyle, Geography, and Disease

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

Microbial strain-level population structure and genetic diversity from metagenomes

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights

Specific gut microbiome signatures and the associated pro-inflamatory functions are linked to pediatric allergy and acquisition of immune tolerance

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

Neonatal antibiotic exposure impairs child growth during the first six years of life by perturbing intestinal microbial colonization

Mediterranean diet intervention in overweight and obese subjects lowers plasma cholesterol and causes changes in the gut microbiome and metabolome independently of energy intake

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Strain-level microbial epidemiology and population genomics from shotgun metagenomics

Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life

Reporting guidelines for human microbiome research: the STORMS checklist

Host phenotype classification from human microbiome data is mainly driven by the presence of microbial taxa

Stool microRNA profiles reflect different dietary and gut microbiome patterns in healthy individuals

Intestinal microbiota influences clinical outcome and side effects of early breast cancer treatment

Post-Disaster Building Database Updating Using Automated Deep Learning: An Integration of Pre-Disaster OpenStreetMap and Multi-Temporal Satellite Data

Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

An Active Learning Framework for Hyperspectral Image Classification Using Hierarchical Segmentation

Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission

A Metabologenomic approach reveals alterations in the gut microbiota of a mouse model of Alzheimer’s disease

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

Profiling microbial strains in urban environments using metagenomic sequencing data

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