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A filtering method to generate high quality short reads using illumina paired-end technology

PloS one, 2013-06, Vol.8 (6), p.e66643-e66643

2013

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The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing

PLoS biology, 2008-11, Vol.6 (11), p.e280-e280

2008

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Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing

PLoS genetics, 2008-11, Vol.4 (11), p.e1000255-e1000255

2008

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Ironing out the wrinkles in the rare biosphere through improved OTU clustering

Environmental microbiology, 2010-07, Vol.12 (7), p.1889-1898

2010

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The Microbiome and Human Biology

Annual review of genomics and human genetics, 2017-08, Vol.18 (1), p.65-86

2017

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Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

The ISME Journal, 2015-03, Vol.9 (4), p.968-979

2015

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Chemical dispersants can suppress the activity of natural oil-degrading microorganisms

Proceedings of the National Academy of Sciences - PNAS, 2015-12, Vol.112 (48), p.14900-14905

2015

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Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

Methods in ecology and evolution, 2013-12, Vol.4 (12), p.1111-1119

2013

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Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing

Molecular ecology, 2011-01, Vol.20 (2), p.258-274

2011

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Accuracy and quality of massively parallel DNA pyrosequencing

Genome biology, 2007-07, Vol.8 (7), p.R143-R143, Article R143

2007

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Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes

FEMS microbiology reviews, 2016-09, Vol.40 (5), p.686-700

2016

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Sewage reflects the microbiomes of human populations

mBio, 2015-02, Vol.6 (2), p.e02574-e02574

2015

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Community Structures of Fecal Bacteria in Cattle from Different Animal Feeding Operations

Applied and Environmental Microbiology, 2011-05, Vol.77 (9), p.2992-3001

2011

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VAMPS: a website for visualization and analysis of microbial population structures

BMC bioinformatics, 2014-02, Vol.15 (1), p.41-41, Article 41

2014

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The premature infant gut microbiome during the first 6 weeks of life differs based on gestational maturity at birth

Pediatric research, 2018-07, Vol.84 (1), p.71-79

2018

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Reproducible Community Dynamics of the Gastrointestinal Microbiota following Antibiotic Perturbation

Infection and Immunity, 2009-06, Vol.77 (6), p.2367-2375

2009

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A Microbial Signature Approach to Identify Fecal Pollution in the Waters Off an Urbanized Coast of Lake Michigan

Microbial ecology, 2013-05, Vol.65 (4), p.1011-1023

2013

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Analysis of Lung Microbiota in Bronchoalveolar Lavage, Protected Brush and Sputum Samples from Subjects with Mild-To-Moderate Cystic Fibrosis Lung Disease

PloS one, 2016-03, Vol.11 (3), p.e0149998-e0149998

2016

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A single genus in the gut microbiome reflects host preference and specificity

The ISME Journal, 2015-01, Vol.9 (1), p.90-100

2015

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Comparison of the Microbial Community Structures of Untreated Wastewaters from Different Geographic Locales

Applied and Environmental Microbiology, 2013-05, Vol.79 (9), p.2906-2913

2013

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Microbial Diversity in the Deep Sea and the Underexplored "Rare Biosphere"

Proceedings of the National Academy of Sciences - PNAS, 2006-08, Vol.103 (32), p.12115-12120

2006

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Biogeography and ecology of the rare and abundant microbial lineages in deep-sea hydrothermal vents

FEMS microbiology ecology, 2015-01, Vol.91 (1), p.1-11

2015

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Marine bacteria exhibit a bipolar distribution

Proceedings of the National Academy of Sciences - PNAS, 2013-02, Vol.110 (6), p.2342-2347

2013

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Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging

Proceedings of the National Academy of Sciences - PNAS, 2011-03, Vol.108 (10), p.4152-4157

2011

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Identification and Removal of Contaminant Sequences From Ribosomal Gene Databases: Lessons From the Census of Deep Life

Frontiers in microbiology, 2018-04, Vol.9, p.840-840

2018

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A filtering method to generate high quality short reads using illumina paired-end technology

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing

Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

The Microbiome and Human Biology

Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

Chemical dispersants can suppress the activity of natural oil-degrading microorganisms

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing

Accuracy and quality of massively parallel DNA pyrosequencing

Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes

Sewage reflects the microbiomes of human populations

Community Structures of Fecal Bacteria in Cattle from Different Animal Feeding Operations

VAMPS: a website for visualization and analysis of microbial population structures

The premature infant gut microbiome during the first 6 weeks of life differs based on gestational maturity at birth

Reproducible Community Dynamics of the Gastrointestinal Microbiota following Antibiotic Perturbation

A Microbial Signature Approach to Identify Fecal Pollution in the Waters Off an Urbanized Coast of Lake Michigan

Analysis of Lung Microbiota in Bronchoalveolar Lavage, Protected Brush and Sputum Samples from Subjects with Mild-To-Moderate Cystic Fibrosis Lung Disease

A single genus in the gut microbiome reflects host preference and specificity

Comparison of the Microbial Community Structures of Untreated Wastewaters from Different Geographic Locales

Microbial Diversity in the Deep Sea and the Underexplored "Rare Biosphere"

Biogeography and ecology of the rare and abundant microbial lineages in deep-sea hydrothermal vents

Marine bacteria exhibit a bipolar distribution

Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging

Identification and Removal of Contaminant Sequences From Ribosomal Gene Databases: Lessons From the Census of Deep Life

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