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Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys

PloS one, 2014-04, Vol.9 (4), p.e94249-e94249

2014

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A filtering method to generate high quality short reads using illumina paired-end technology

PloS one, 2013-06, Vol.8 (6), p.e66643-e66643

2013

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Ironing out the wrinkles in the rare biosphere through improved OTU clustering

Environmental microbiology, 2010-07, Vol.12 (7), p.1889-1898

2010

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Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

The ISME Journal, 2015-03, Vol.9 (4), p.968-979

2015

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Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

Methods in ecology and evolution, 2013-12, Vol.4 (12), p.1111-1119

2013

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Maternal diet during pregnancy is related with the infant stool microbiome in a delivery mode-dependent manner

Microbiome, 2018-07, Vol.6 (1), p.109-109, Article 109

2018

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Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

Genome Biology, 2020-12, Vol.21 (1), p.292-35, Article 292

2020

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Accuracy and quality of massively parallel DNA pyrosequencing

Genome biology, 2007-01, Vol.8 (7), p.R143-R143

2007

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Sewage reflects the microbiomes of human populations

mBio, 2015-02, Vol.6 (2), p.e02574-e02574

2015

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VAMPS: a website for visualization and analysis of microbial population structures

BMC bioinformatics, 2014-02, Vol.15 (1), p.41-41, Article 41

2014

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Reproducible Community Dynamics of the Gastrointestinal Microbiota following Antibiotic Perturbation

Infection and Immunity, 2009-06, Vol.77 (6), p.2367-2375

2009

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Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition

Genome biology, 2010-01, Vol.11 (12), p.R119-R119

2010

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Microbial Diversity in the Deep Sea and the Underexplored "Rare Biosphere"

Proceedings of the National Academy of Sciences - PNAS, 2006-08, Vol.103 (32), p.12115-12120

2006

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A single genus in the gut microbiome reflects host preference and specificity

The ISME Journal, 2015-01, Vol.9 (1), p.90-100

2015

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High molecular weight DNA extraction strategies for long‐read sequencing of complex metagenomes

Molecular ecology resources, 2022-07, Vol.22 (5), p.1786-1802

2022

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Analysis of Lung Microbiota in Bronchoalveolar Lavage, Protected Brush and Sputum Samples from Subjects with Mild-To-Moderate Cystic Fibrosis Lung Disease

PloS one, 2016-03, Vol.11 (3), p.e0149998-e0149998

2016

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A Microbial Signature Approach to Identify Fecal Pollution in the Waters Off an Urbanized Coast of Lake Michigan

Microbial ecology, 2013-05, Vol.65 (4), p.1011-1023

2013

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Microbial Population Structures in the Deep Marine Biosphere

Science (American Association for the Advancement of Science), 2007-10, Vol.318 (5847), p.97-100

2007

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Shifts in the microbial community composition of Gulf Coast beaches following beach oiling

PloS one, 2013-09, Vol.8 (9), p.e74265

2013

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Associations between Gut Microbial Colonization in Early Life and Respiratory Outcomes in Cystic Fibrosis

The Journal of pediatrics, 2015-07, Vol.167 (1), p.138-147.e3

2015

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Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres

PloS one, 2014-04, Vol.9 (4), p.e95380-e95380

2014

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Infant Feeding Alters the Longitudinal Impact of Birth Mode on the Development of the Gut Microbiota in the First Year of Life

Frontiers in microbiology, 2021-04, Vol.12, p.642197

2021

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The infant gut resistome is associated with E. coli and early-life exposures

BMC microbiology, 2021-07, Vol.21 (1), p.201-18, Article 201

2021

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Sex-specific associations of infants' gut microbiome with arsenic exposure in a US population

Scientific reports, 2018-08, Vol.8 (1), p.12627-10, Article 12627

2018

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Electroactive Bacteria Associated With Stainless Steel Ennoblement in Seawater

Frontiers in microbiology, 2019, Vol.10 (FEB), p.170-170

2019

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Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys

A filtering method to generate high quality short reads using illumina paired-end technology

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

Maternal diet during pregnancy is related with the infant stool microbiome in a delivery mode-dependent manner

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

Accuracy and quality of massively parallel DNA pyrosequencing

Sewage reflects the microbiomes of human populations

VAMPS: a website for visualization and analysis of microbial population structures

Reproducible Community Dynamics of the Gastrointestinal Microbiota following Antibiotic Perturbation

Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition

Microbial Diversity in the Deep Sea and the Underexplored "Rare Biosphere"

A single genus in the gut microbiome reflects host preference and specificity

High molecular weight DNA extraction strategies for long‐read sequencing of complex metagenomes

Analysis of Lung Microbiota in Bronchoalveolar Lavage, Protected Brush and Sputum Samples from Subjects with Mild-To-Moderate Cystic Fibrosis Lung Disease

A Microbial Signature Approach to Identify Fecal Pollution in the Waters Off an Urbanized Coast of Lake Michigan

Microbial Population Structures in the Deep Marine Biosphere

Shifts in the microbial community composition of Gulf Coast beaches following beach oiling

Associations between Gut Microbial Colonization in Early Life and Respiratory Outcomes in Cystic Fibrosis

Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres

Infant Feeding Alters the Longitudinal Impact of Birth Mode on the Development of the Gut Microbiota in the First Year of Life

The infant gut resistome is associated with E. coli and early-life exposures

Sex-specific associations of infants' gut microbiome with arsenic exposure in a US population

Electroactive Bacteria Associated With Stainless Steel Ennoblement in Seawater

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