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Acquisition of the L452R Mutation in the ACE2-Binding Interface of Spike Protein Triggers Recent Massive Expansion of SARS-CoV-2 Variants

Journal of clinical microbiology, 2021-10, Vol.59 (11), p.e0092121-e0092121

2021

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Direct Whole-Genome Sequencing of Sputum Accurately Identifies Drug-Resistant Mycobacterium tuberculosis Faster than MGIT Culture Sequencing

Journal of clinical microbiology, 2018-08, Vol.56 (8)

2018

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Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples

Journal of clinical microbiology, 2019-12, Vol.58 (1)

2019

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Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates

Journal of clinical microbiology, 2017-12, Vol.55 (12), p.3530-3543

2017

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Species Identification and Antibiotic Resistance Prediction by Analysis of Whole-Genome Sequence Data by Use of ARESdb: an Analysis of Isolates from the Unyvero Lower Respiratory Tract Infection Trial

Journal of clinical microbiology, 2020-06, Vol.58 (7)

2020

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Persistent Transmission of Shigellosis in England Is Associated with a Recently Emerged Multidrug-Resistant Strain of Shigella sonnei

Journal of clinical microbiology, 2020-03, Vol.58 (4)

2020

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Assessment of SARS-CoV-2 Genome Sequencing: Quality Criteria and Low-Frequency Variants

Journal of clinical microbiology, 2021-09, Vol.59 (10), p.e0094421-e0094421

2021

Volltextzugriff (PDF)

Real-Time Nanopore Q20+ Sequencing Enables Extremely Fast and Accurate Core Genome MLST Typing and Democratizes Access to High-Resolution Bacterial Pathogen Surveillance

Journal of clinical microbiology, 2023-04, Vol.61 (4), p.e0163122-e0163122

2023

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Genomic Analysis of a Hospital-Associated Outbreak of Mycobacterium abscessus: Implications on Transmission

Journal of clinical microbiology, 2022-01, Vol.60 (1), p.e0154721

2022

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Genomic Investigation Reveals Contaminated Detergent as the Source of an Extended-Spectrum-β-Lactamase-Producing Klebsiella michiganensis Outbreak in a Neonatal Unit

Journal of clinical microbiology, 2020-04, Vol.58 (5)

2020

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hicap: In Silico Serotyping of the Haemophilus influenzae Capsule Locus

Journal of clinical microbiology, 2019-06, Vol.57 (6)

2019

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Validation of the VirCapSeq-VERT system for differential diagnosis, detection, and surveillance of viral infections

Journal of clinical microbiology, 2024-01, Vol.62 (1), p.e0061223

2024

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A core-genome multilocus sequence typing scheme for the detection of genetically related Streptococcus pyogenes clusters

Journal of clinical microbiology, 2023-11, Vol.61 (11), p.e0055823-e0055823

2023

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Utilizing cost-effective portable equipment to enhance COVID-19 variant tracking both on-site and at a large scale

Journal of clinical microbiology, 2024-04, Vol.62 (4), p.e0155823

2024

Volltextzugriff (PDF)

Population Genomic Molecular Epidemiological Study of Macrolide-Resistant Streptococcus pyogenes in Iceland, 1995 to 2016: Identification of a Large Clonal Population with a pbp2x Mutation Conferring Reduced In Vitro β-Lactam Susceptibility

Journal of clinical microbiology, 2020-08, Vol.58 (9)

2020

Volltextzugriff (PDF)

Machine-Learning Model for Prediction of Cefepime Susceptibility in Escherichia coli from Whole-Genome Sequencing Data

Journal of clinical microbiology, 2023-03, Vol.61 (3), p.e0143122-e0143122

2023

Volltextzugriff (PDF)

Helicobacter pylori Infections in the Bronx, New York: Surveying Antibiotic Susceptibility and Strain Lineage by Whole-Genome Sequencing

Journal of clinical microbiology, 2020-02, Vol.58 (3)

2020

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Complex norovirus transmission dynamics at hospital wards revealed by deep sequencing

Journal of clinical microbiology, 2023-11, Vol.61 (11), p.e0060823-e0060823

2023

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Whole-Genome Subtyping Reveals Population Structure and Host Adaptation of Salmonella Typhimurium from Wild Birds

Journal of clinical microbiology, 2023-06, Vol.61 (6), p.e0184722-e0184722

2023

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Metagenomic Next-Generation Sequencing for Identification and Quantitation of Transplant-Related DNA Viruses

Journal of clinical microbiology, 2019-12, Vol.57 (12)

2019

Volltextzugriff (PDF)

Serratia marcescens Outbreak in a Neonatal Intensive Care Unit: New Insights from Next-Generation Sequencing Applications

Journal of clinical microbiology, 2018-09, Vol.56 (9), p.JCM.00235-18

2018

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A Nationwide Plasmidome Surveillance in Thailand Reveals a Limited Variety of New Delhi Metallo-β-Lactamase-Producing Carbapenem-Resistant Enterobacteriaceae Clones and Spreading Plasmids

Journal of clinical microbiology, 2022-12, Vol.60 (12), p.e0108022-e0108022

2022

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Epidemiology, Clinical Characteristics, and Antimicrobial Susceptibility Profiles of Human Clinical Isolates of Staphylococcus intermedius Group

Journal of clinical microbiology, 2018-03, Vol.56 (3)

2018

Volltextzugriff (PDF)

Clinical Performance of the Osmotic Shock-MALDI MS Method to Detect Klebsiella pneumoniae Carbapenemase in Clinical Isolates

Journal of clinical microbiology, 2022-11, Vol.60 (11), p.e0106222-e0106222

2022

Volltextzugriff (PDF)

Whole-Genome Sequencing of Emerging Invasive Neisseria meningitidis Serogroup W in Sweden

Journal of clinical microbiology, 2018-04, Vol.56 (4)

2018

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Acquisition of the L452R Mutation in the ACE2-Binding Interface of Spike Protein Triggers Recent Massive Expansion of SARS-CoV-2 Variants

Direct Whole-Genome Sequencing of Sputum Accurately Identifies Drug-Resistant Mycobacterium tuberculosis Faster than MGIT Culture Sequencing

Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples

Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates

Species Identification and Antibiotic Resistance Prediction by Analysis of Whole-Genome Sequence Data by Use of ARESdb: an Analysis of Isolates from the Unyvero Lower Respiratory Tract Infection Trial

Persistent Transmission of Shigellosis in England Is Associated with a Recently Emerged Multidrug-Resistant Strain of Shigella sonnei

Assessment of SARS-CoV-2 Genome Sequencing: Quality Criteria and Low-Frequency Variants

Real-Time Nanopore Q20+ Sequencing Enables Extremely Fast and Accurate Core Genome MLST Typing and Democratizes Access to High-Resolution Bacterial Pathogen Surveillance

Genomic Analysis of a Hospital-Associated Outbreak of Mycobacterium abscessus: Implications on Transmission

Genomic Investigation Reveals Contaminated Detergent as the Source of an Extended-Spectrum-β-Lactamase-Producing Klebsiella michiganensis Outbreak in a Neonatal Unit

hicap: In Silico Serotyping of the Haemophilus influenzae Capsule Locus

Validation of the VirCapSeq-VERT system for differential diagnosis, detection, and surveillance of viral infections

A core-genome multilocus sequence typing scheme for the detection of genetically related Streptococcus pyogenes clusters

Utilizing cost-effective portable equipment to enhance COVID-19 variant tracking both on-site and at a large scale

Population Genomic Molecular Epidemiological Study of Macrolide-Resistant Streptococcus pyogenes in Iceland, 1995 to 2016: Identification of a Large Clonal Population with a pbp2x Mutation Conferring Reduced In Vitro β-Lactam Susceptibility

Machine-Learning Model for Prediction of Cefepime Susceptibility in Escherichia coli from Whole-Genome Sequencing Data

Helicobacter pylori Infections in the Bronx, New York: Surveying Antibiotic Susceptibility and Strain Lineage by Whole-Genome Sequencing

Complex norovirus transmission dynamics at hospital wards revealed by deep sequencing

Whole-Genome Subtyping Reveals Population Structure and Host Adaptation of Salmonella Typhimurium from Wild Birds

Metagenomic Next-Generation Sequencing for Identification and Quantitation of Transplant-Related DNA Viruses

Serratia marcescens Outbreak in a Neonatal Intensive Care Unit: New Insights from Next-Generation Sequencing Applications

A Nationwide Plasmidome Surveillance in Thailand Reveals a Limited Variety of New Delhi Metallo-β-Lactamase-Producing Carbapenem-Resistant Enterobacteriaceae Clones and Spreading Plasmids

Epidemiology, Clinical Characteristics, and Antimicrobial Susceptibility Profiles of Human Clinical Isolates of Staphylococcus intermedius Group

Clinical Performance of the Osmotic Shock-MALDI MS Method to Detect Klebsiella pneumoniae Carbapenemase in Clinical Isolates

Whole-Genome Sequencing of Emerging Invasive Neisseria meningitidis Serogroup W in Sweden

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